RNA id: XM_039781909.1


Basic Information

Item Value
RNA id XM_039781909.1
length 4048
RNA type mRNA
GC content 0.52
exon number 34
gene id LOC120546742
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14024484 ~ 14140769 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCATGTCGCTCAGTCAGACTCAGTCAGTCATTCAGTCAGTTAGTGGCCCCGGTCCGCTGCGCCTGCGTCCTCCTCCATACAGCTCTCCAAAGCCAAGACGCGCCACCGCCGCCGTCAATGCGGGCATGACATACTGCTGGCAGCAGTAGTGAAGTCAGCCGGCTTTTAAGCAGATTacaaaagaagaggaagagacgTAAGAGTAGAAGAGAGTGAAGTGACTGATTTCTACCCCTGCCGTGCGTCGAGAAGAGTAGATGAGGCAATGGCAGGGGCACAGCCTGGAGTTCATGCGCTGCAGCTCAAGCCAGTGTCCGTGCCCGAGAGCCTAAGAAGGGGCACCAAATTTATGAAATGGGATGATGATTCTACCACTGTGACCCCGGTGACTCTAACAGTCGACCCCAAAGGTTACTTCTTGTATTGGACCGACCAGAACAAGGATACAGACCTACTGGATATAGCGCACATAAAAGATGCCAGAAATGGAAAGTGCACTAAAACGCCAAAGGATGCCAAGCTGCGTGAGCTACTGGATGTCAGCACGCTGGCGGGGAAGATGGAGAACAGGATGCTGACAGTAGTGAGCGGCCCTGACATGGTCAACATCACCTATCTGAACTTCATGGCCTTCCAGGAGGACACGGCGAAGGAATGGGCGGAAGAGCTGTTCAACCTGGCATCTAACCTCTTTGTACAGAACATGTCCAGAGAGGCCTGCCTTGAGAAAATATACACTCGGCTGAAGCTGCAGCTCAACCCTGAGGGGCGAATCCCCGTCAAGAATATCTTCAGGATGTTCTCAGCAGACAGGAAGCGAGTAGAGACAGCCCTGGAAAACTGTAACCTCCCTTCTGGCAGACAGAATGACTCCATCCCACAAGAGGATTTCATTCCAGAGGTCTACAACATGTTCCTGAGCAACATCTGCCCCCGATCTGAGCTGGACCACATCTTCTCTGACATGGGAGCTAAGAGTCGTCCATACCTCAGTTTGGAGCAGATGACAGAGTTTATCAACAGTAAACAGCGAGACCCTCGTTTGAACGAGATACTCTACCCTCCCCTCAAACCAGAACAGGTCCAGATGCTGGTGGACAAATATGAACCCAACGCTTCCCTCGCACAGAAAGGTCAGATCTCGGTGGAAGGCTTTGCCAGGTATCTAAATGGGGAGGAGAACAGCATCATCCCCCCTGAGAAGCTGGACCAGAGTGAAGACATGACCCTTCCCCTTTCCCACTATTTCATCAACTCCTCCCACAACACATACCTCACAGCCGGCCAGCTCGCAGGGAACTCTTCAGTCGAGATGTACAAGCAGGTTCTGCTGTCGGGGTGCCGCTGCATTGAACTGGACTGCTGGAAGGGTCGCACCACAGAAGAAGAGCCCGTCATCACTCACGGCTTCACCATGACAACTGAAATCTCCTTCAAGGAGGTGATCGAGGCCATAGCAGAGTGTGCCTTCAAGACCTCGCCCTTCCCCATCATCCTGTCTTTTGAGAACCATGTGGACTCACCGAAGCAGCAGGCTAAGATGGCAGAGTACTGCCGGTCAATATTTGGAGACGCATTACTGACAGAACCTCTGGAGAAATATCCTCTGGAGTCTGGTGTGCCGCTACCGAGCCCGATGGAGCTGATGGGGAAGATCTTGgtgaagaacaagaagaaacaCCACAAGACAGACGGAAGCGCCAAGAAGAAGCTCTCGGAGCAGGTGTCCAACACCTACAGCGATTCTTCCAGTGTTTGCGAGCCCTCCTCCCCTAGCGCAGGTTCAACCAAAGAGGAGATGGCGGATTCCTCGCAGCCTTCAGAGGGCGCTGAGCTCAGCCTGAGGCCGCAGGGCAGAAAGTCTATTGGTGAGGTGGAGGCAGAGagtgaggatgatgatgatgatgatgacgactgTAAAAAGGGCTCAATGGATGAGGGTACAGCAGGCAGTGAGGCATTTGCTACAGTGGAAATGTCCAACCTGGTCATCTACATCCAGCCTGTCAAGTTTAACAGCTTCGAGGCTTCCAAAAAGATCAATCGCAGCTTCCAGATGTCATCCTTCGTAGAGACCAAAGCTTTGGAACAGCTGACCAAATGTCCTGTAGAGTTTGTGGAATACAACAAGCTGCAGCTGAGCAGGATTTACCCTAAAGGCACTCGAGTGGATTCATCCAACTACAACCCTCAGCTCTTCTGGAACGCCGGCTGTCAGCTGGTGGCTCTCAACTTCCAAACAATTGATTTGTCCATGCAGTTGAACCTGGGCATGTACGAGTACAATGGGAAATGTGGCTACAGACTCAAACCGGAGTTTATGAGGCGGCCGGACAAACACTTTGACCCTTTCACTGAGAGCACAGTGGATGGGATAGTAGCCAACACACTGTCTGTAaagATAATTTCCGGCCAGTTCCTGTCAGATAAGAAAGTAGGCACGTATGTGGAGATTGACATGTTCGGCTTACCAGTGGACACCAAGAGGAAAGCGTTCAAGACCAAGACTTCTCAAGGCAACGCCATCAACCCTGTCTGGGAAGAGGAGGCTATTGTCTTCAAGAAGGTTGTTCTGCCCACACTTGCTTCATTAAGGATAGCCGTGTTTGAAGAAGGAGGGAAGTTCATCGGCCACCGTATCATTCCTGTGTCAGCCATCCGTCCAGGCTATCACTACATCAGCCTAAGGAATGAGAAGAACCAGTCCCTGACTTTGCCGgctctgtttgtgtatgtagaAGTAAAGGACTATGTCCCAGACACATTTGCAGATGTCATTGAAGCCTTGTCCAATCCCATCCGCTATGTCAACCTGATGGAGCAGAGAGCCAATCAGCTGGCTGCTCTCACtctggaggagggaggagaggaggagggtgacaaagagGTGGAGGCAGGAAGTGATGCCCCCTCAGAATCTAAGGTGGACCAGAGGGTGACGTTGCCTGCAGAGAACGGACTGAGCCACACACCCATTATCGCCCCGAAACCCCCTTCGCTGGTCGGACACCAGCCCCAGTCTGCAGGTTCATTGAAACCATCAGTGAAGACTGAAGACATCATTCAGAGTGTCCTCACTGAATTAGAGGCTCAGACGGTGGAGGAGTTGAAGCAACAGAAGGGCTTTGTCCGAGAGCAGAGGAAGCAGTACAAGGAGATGAAGGAGCTGGTTCGGAAACACCACCGCAAGACCAGCGAGCTGATCAAGGAGCACACTGCGCGTGTGTCCGAGCTACAGAGCCAGCATCAGCGCCGGCGCTCTGCCCTGCAGAAGAGCCGCAAACGAGACGGTAAGAAAAGtcgGTCCGAACACTCTCTGTCAAGCCTGGACCAGGAGCTGTGTGAGCTGGATCAGGAGTGCAGCCAGAGGCTTGCAGAGCTgaaggaggagcagcagcagcagctcctcaCACTTCGCCAGGAGCAGTACTACAGCGAAAAGTACCAGAAACGAGAACACATCAAGCAGcTGGTTGAGAAGCTTACCACTATAGCAGAGGAGTGCCAGAGCGCTCAGATCAAAAAACTCAGAGACATCTGTGAGAAAGAAAAGAAGGATATCAAGAAGAAAATGGACAAGAAAAGGCAAGAGAAGATCAGTGAAGCCAAATCTAAAGACAAGAATGTGACAGAGGAAGAGAAGCTGGAGATCAACAGATCGTTTGTCAACGAGGTGGTGCAGTACATTAAACGGttggaAGACGCACAGAGTAAAAGACAGGAGAGACTGCTGGAGAAGCAGAAGGATATCCGCCAACAAATCTTGGATGAAAGGCCAAAGGACGATTGTGCAGCTGAAGAGCATGCTACAGAGCGATCTGGACCAGGAGTACCAGGACAAATTTCGCCGGCTACCCGTGGAGATCCAAGAGTTTGTTCAGGACAGCAGCAAGGCCAAGCTTAGCGACGAAGGTGTCCACGGAAACCTTGTTGCCTCCTCAACAACAGAGAGGCTAAACCACAAGGCGCTGCAGTCGGAGGACGACATGGAGGAGGGCTCATCGGAACGGGTCTACGACACGCCCCTTTAGAGATTTAACCTCGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637034.1 lncRNA upstream 35828 13952385 ~ 13988656 (+) True LOC120547176
XR_005637035.1 lncRNA upstream 35828 13956925 ~ 13988656 (+) False LOC120547176
TU249355 lncRNA upstream 133568 13889301 ~ 13890916 (+) True G184128
TU249294 lncRNA upstream 550351 13468423 ~ 13474133 (+) False LOC120546706
TU249297 lncRNA upstream 563578 13458602 ~ 13460906 (+) False G184085
TU249492 lncRNA downstream 230233 14370124 ~ 14370768 (+) True G184235
TU249501 lncRNA downstream 282436 14422327 ~ 14424853 (+) False LOC120546619
TU249514 lncRNA downstream 336733 14476624 ~ 14565127 (+) True G184249
TU249531 lncRNA downstream 418651 14558542 ~ 14606665 (+) True G184263
TU249632 lncRNA downstream 515743 14655634 ~ 14656247 (+) True G184339
XM_039782503.1 mRNA upstream 34405 13989481 ~ 13990079 (+) True LOC120547093
XM_039782333.1 mRNA upstream 85925 13933833 ~ 13938559 (+) True chgb
XM_039781329.1 mRNA upstream 148849 13870887 ~ 13875635 (+) True gzf1
XM_039780953.1 mRNA upstream 447068 13502644 ~ 13577416 (+) True atad2b
XM_039781817.1 mRNA upstream 550325 13468805 ~ 13474159 (+) True LOC120546706
XM_039781330.1 mRNA downstream 4694 14144585 ~ 14229227 (+) True LOC120546405
XM_039781439.1 mRNA downstream 92387 14232278 ~ 14234991 (+) True LOC120546497
XM_039781440.1 mRNA downstream 95388 14235279 ~ 14240598 (+) True lamp5
XM_039782364.1 mRNA downstream 189727 14329618 ~ 14335642 (+) False LOC120547018
XM_039782362.1 mRNA downstream 189727 14329618 ~ 14335642 (+) True LOC120547018
TU249175 other upstream 777068 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 874406 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 1016073 12990676 ~ 13008411 (+) True LOC120546167
XR_005637057.1 other upstream 3293702 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 3358012 10622736 ~ 10666472 (+) True G183540
TU249487 other downstream 222450 14362341 ~ 14381187 (+) True G184231
TU249525 other downstream 385245 14525136 ~ 14529370 (+) True G184258
XR_005636833.1 other downstream 1149783 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 1162034 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 1520682 15660573 ~ 15663574 (+) True rhov

Expression Profile