RNA id: XM_039781925.1


Basic Information

Item Value
RNA id XM_039781925.1
length 922
RNA type mRNA
GC content 0.46
exon number 5
gene id rsph9
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16605386 ~ 16609726 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGACTCGAATTCGTTATACTATTCTTTGGAACTCGTTGCCGGTAGCGGAAGTACTTTAAACGTTGAGCAAAGAACCGCACTGCAGACTTCCTTGGTGATCCTGAAGAAAAACTACAAGTTCCATCGAGTCTTGTTTTGGGGCAAAATATTGGGTTTAAAGGAGGATTATTTTATCGCTCAGGGGAGAGGAGAAGATGAACTGCAGGATAAAAAGAATCTCTATAGCTTCAACTGCATGGACTGGTTCCTGCTCCCTCCTGCCACCGAATCTATGATGGAGAAAGTGTCCAAAATCAAGAGTCGCTTCATAGGAGACCCCTCATTTGTGTATGAGCACATTGAGATCCGCAGGCAAGGAGAGAGGGATGACGCTACAGAGGAGGTAGTGATTAAGGTCAATGAGGAGAGCCGGCTGGCAGTGACAGTTCATCAGATCGATGATGAAGTGTCCGTGGTACCACGTGGAGCCTTCGTCAAGAGTCCACATGGTCTTGTCCAGATGAACCGCAGCTTTGGTGGTCTGTCTCACTCAGAAGCAGGGAAGCTTGACAACTTCCTTCACTTCAGCGAAGCAAAGAACCTGAAGAAGAAATCCATCCTGGAAATGGGTGATTTGAACCCAGCCATCGACTTCCTGGATGTACTGAGTGATGACATTCCTAAAGGATCGTGGAGTCTTCAGCTTGAATGTGCCAGCAAAGTGTGCGTGCTTCGCAGCCTGTTGTGGCTTGGCCTGAGCTTCTACCATGTGCCAATGACACCTCAGCATGGATACATGTATATCGGTGATGGGATCAAGAATTTGGACCTTCCCTTCAtgctataaaaaaacaaaaaaaaacaaaagagagacATTTCctgtttcaagctacaaactcatgtgtctctgttgtTCACATCAACCCTCAACATGTATTCTA

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636882.1 lncRNA upstream 89206 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 103652 16495957 ~ 16501887 (+) False LOC120546561
TU250223 lncRNA upstream 105565 16493194 ~ 16499974 (+) True LOC120546561
TU250220 lncRNA upstream 111045 16493194 ~ 16494494 (+) False LOC120546561
TU250017 lncRNA upstream 192038 16411676 ~ 16413501 (+) True G184633
TU250330 lncRNA downstream 72169 16681895 ~ 16686079 (+) True vegfab
TU250341 lncRNA downstream 115151 16724877 ~ 16726392 (+) True G184851
TU250480 lncRNA downstream 323970 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 671389 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 679125 17288851 ~ 17292275 (+) True G184995
XM_039781924.1 mRNA upstream 6077 16590045 ~ 16599462 (+) True tmem63a
XM_039781922.1 mRNA upstream 7548 16588850 ~ 16597991 (+) False tmem63a
XM_039781923.1 mRNA upstream 7548 16589193 ~ 16597991 (+) False tmem63a
XM_039782711.1 mRNA upstream 61044 16536311 ~ 16544495 (+) True faxca
XM_039781920.1 mRNA downstream 61860 16671586 ~ 16683281 (+) False vegfab
XM_039781919.1 mRNA downstream 61863 16671589 ~ 16686078 (+) False vegfab
XM_039781921.1 mRNA downstream 61865 16671591 ~ 16686078 (+) False vegfab
XM_039781964.1 mRNA downstream 120337 16730063 ~ 16744830 (+) False LOC120546775
XM_039781962.1 mRNA downstream 120362 16730088 ~ 16744380 (+) True LOC120546775
TU250012 other upstream 203436 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 637416 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 889255 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 889255 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 941965 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 155819 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 215968 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 683928 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 732111 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 732111 17341837 ~ 17365977 (+) False map7b

Expression Profile