RNA id: XM_039781962.1


Basic Information

Item Value
RNA id XM_039781962.1
length 5912
RNA type mRNA
GC content 0.49
exon number 21
gene id LOC120546775
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16730063 ~ 16744830 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGTGCCTAAGATAGATGCACACAGGCAGCCACAGGGAGCCATGGCAGAAACAAGCCTGGGTGTTTTTGGCATTGTGAAGACAGTCCTACAAAGTGCAGCAGCAGGTTTTGCTTTTGGAGAAGCTGCGTTATTTGCAGTTGAGCCCTCACTGACTGAAGATGGCGTCCTGCTGACTGCTGCGACTCTGGCTGCTGGGCGAGCCGGTTCCACAGGCGTCGGGGTGGTGACGGCATGCCTCGTGTTCACCTCAGTGCTCATTTCTCTGGGAtgtggtttcctcctcgctgcCATGGTGATGAAGCTGCTGACCAACGTTGGAGTGACGTTGCCGTGGTTAGTGGAGGCCACAACAGGAGCCTCTGTTGTGGTGGGAGCCGTCACTACAGGAGTGTTAGCGGGCATCCTTCCACCATGGATCTACATCGCAGCCCAAGGCATTCTGGTCCTTGTAGTCTACTCTTACTCCAATATTAATGACATGACCACAGCTCTGTTAATCATCTTCACCACTCTGTACCTCAGTGTCCTATACGGCAGAATGGGTATCATGGTTGGACTCTTCGTCGTGGGATTGACCATCTCTGTGCTTTGTGCCCTACGAAAGGCTCTGACAGAGAGGATGACACAAAGAACAAAATCTAAAACCGGGTGCAAACTTTTAGAGAGGATATTCTTCTACTCTGTTTTTGTGGGGATACTGGGATTTTCAGTAGGTTTGGGTGCAGGTGAAGCAGGAGAAGGGTCTGAAGCAGAGGTGGTTTTGATGCTGCAGTCGGTCCTCTGGATGGCGTTTCTGTCTGCAGGGCTGCTAGGTGCTGGCCTGGGAACTGTGGCCATGGTCGGGCTGGGGCCAGAGGTGGCTGGAAAGATCGCTGTGGGAGCTGCTATAATATCATCAGTTTCCCTGAGAGCCATTCTGCAATCAAGCTCTTCTCTGGGGACCCGAAGCAGCATAGGTGGAACGTTAGGAGCTGCTACAGCTGCAGGGGTGTCACTTGGAGCTGCAAGTGTTGCAGCAAAACAAGCGTTCGGGTCTAGAAACTCAACTTTAGCAACTTTAGGTTCAGTTGTTGTTGGTGCAATTCTGGCAATGCAAGGTGTAGCACTGAAAGTGACTCTCCTGACAACATCAGAACTTCTCACAATCACCCTTGTTGCAGTGGGGGCATTTGTTCTTGGTGCACCAAAGAGCCCATTCCACACTCAGGTGAATCTCCAAAGAGGCCTTCTCTCGGGGCCAGAGCTAATTAAAGGAATCGGCATGGAGACGGTcaccgcagcagcagcacctaTCGGAGCCGGGGCACTCGGGGCTGCAGCATTGGGTACCGCAGCCCTGGGGAGACTGGGTACTGTGGGAGTTCTGGTGGCTATATTGTTGGCGTTGGGAAGTGCTCTTAGTGGCATGATAGGAAAATCACCGCCgacaacaagcacacacagagagtgatTGAAGCCTGGGTTTAGATCTCTGTCTCTGCATGCCTGAATACAAGGCCAGACACTAAAAAAAGAGTGCATACAGTATTTGTGCATGTTAACTAGATTGATGTGTTTGCATTATTGCACGTCTACACTGGCATACAAGTTATAACAACTTTCAAATTTAGCTTATTTGAATCTgatttttaaattcaaaagcgCATTTGCTTATTGATCAAATCTGACAATTGtcataaacatgttttattgtggCTACCAGTGTTGAATAAAATAGATGATAAAAGTTATCCAagcatgtgtttttgtatttattgacTAAAATATGAATATCTTAGTACTGATTACTGTAAGACACTGGGGGGTCAAACAAGTTGAATGCCAAAATAGCTGTAATGATCCCTTTTGCTCACCTCTTCACACCAGCATTGCCACATTTCCCAAGAGGTGATTGCAAGTTGCCAGTTACTTTGGTTTCATCTTAGCAACAGTAACAGAGGACTAGAAAAAGGAGGGGGagtgggaggagagagaagcaaaGACTAACAGAAGACTGAAGAGCATCTTTGAGTAGAGTCTGTTGTGCAGACGATTAAGACAAATATAGACTCACAcatcaaaataacattttctgcctatatatattcatattacCCTTACTGAAAATATTATATGTTGCATGCGAATGGATATCCACCTGTGGCTCAGGGTTTTGTTGGTCTACCATGGCAGCACAAAGGACTGCAGCATCATGAACAAAGAAGTTTTTCCCACTGAAACAGCCTGGggacagagcagcagctccaagACTGTGAGACGCTCTCAGAATCTAAAATACTTCTAAGGAATTGTATGGCACCATAAAATGAAGAAACATGGTAATCGTTTTGAAAGGTAAGCACATTTCTATGGTGGATAAAGCCAATGGTGAAAGTCATTGGAACACTCTGGGATGTAATTAGTTTCTGCACTGCCATGTTTTTCATTGAGTTGGATTGAattttgcaacaacaaaaatgaaaagtttGACAATGTAATTATCTCCTAAAGTAGAACAAAGATGGGCTGCATCCCAACTTTTCCATGGATTTTGGCATTCTGCGCACTTCAGGattaatgtaggcctacaacAGTATTACTCCATGAACCTTAAGAGAAGTAGGCTACCTTAATAGAAGCAACATGTCTCTTAACCGGGTCCATACAACAGACACGGAGCAGTCTGCAGAGTACTCAGTGGAGTATTCAGTTCGGGTTCCCAGTGATCCGGGTCATGGAGCGGGTCGGACGCGTGAAGTGGCCGTGCTCCAGTCGAGCTGCTGCCGCTGCCTGCCGCGCGCAATGCGCCTCACTTTTGCGCCAGAATCACTGGAGAGAATTTACCAGAACTACTTCTGCCGACAGAGACAAGAGAACATGCTCGTGCTGGTGATGTTTGCTGCTCTTTTCAACagcttcatcatcatcatgtgcGCGGTGGTGTACACTCAGGACAAACTGGCGATGGTGGTGGTCGCAGCTGTGGCTCTGGCTGCGGACATGGTGCTCTACGTGCTGTCCTGGCGACAGAAGCTCCCTGCGTCGCCAGTCTCACGCGCAGCAGTGCCGTACATACTGTGGCTGATGATCACCGTCCACGTTTTATGTTACATTTTTCTGAATTTCCAGCGTTTCCCCCATGCCAGTGACTCTGTGGGCTGGCAGGTCTTTTTCAGTTTCTCCAGCTTTCTGACACTCCCGCTGAACATGGTGCCGCTGCTCCTGCTCACAGCCCTCTCCTGTGGGATATACACCCTGGTACTGGGGCTGACCGTGGCTCAAACTTTACAGGACAACCTGCAGGGGCCCATGCTGGCGAGACAGCTCCTAGCCAACGTGATGCTGTACCTGTGCGCAGCCACAGTGGGTGTGATGTCTTACTACATGGCGGACAGGAAGTACAGGACAGCTTTTTTGGAGGCCCGTCAGTCACTAGAGGTCAAACTCACGCTGGAGGAGCAGAGCACCCAGCAGGAGGAACTATTACTGTCCATCCTGCCAAAACACATCGCTGACGAGATGCTGCAGGGCATGAAGAACCAGGCCGATCAGAATGAGGGACAGCACCAGCAGTTCAACACCATGTACATGTACCGCCATGAAAACGTCAGTATCCTGTTTGCTGACATTGTGGGCTTCACCCAGCTGTCCTCAGCCTGTAGCGCCCAGGAGCTTGTAAAGCTGCTTAATGAACTGTTCGCCCGCTTTGATAAACTGGCAGAAGAACATCACCAGCTGAGGATAAAGATCCTCGGAGACTGTTACTATTGCATCTGTGGTCTTCCTGACTTCAGAGATGACCACGCTGCCTGCTCCATAATGATGGGCCTAGCGATGGTAGACGCCATATCGTACGTGCGAGAGAAGACTAAAACTGACGTGGACATGCGTGTGGGCGTTCACACGGGCACCGTGCTGGGAGGAGTGCTCGGGCAGAAGAGGTGGCAGTTTGACGTTTGGTCCACAGATGTCACTGTAGCCAATAAGATGGAATCTGGGGGGATTCCTGGGAGAGTGCATATTTCCCAGACCACCAAGGACAGTCTGCATGGAGAATTTGAGCTGGAGCCAGGGGACGGCGGGGAAAGGTGCGAGTACCTGCTGGAGAAAGGCATCGACACTTACTTGGTTCTAGTGTCTAAACAGGTGGCGAATGGGCACAGTGAAAATAAACCAGGCACATTGTCCAACAGAAATTCAGACAAGTTGATCAGCACTACAGAAACCAATTGCAATGCAGCATCACCCCAATCCACACCCACTGAGTCTAAACAGGAGAGGAATAAGATGGTCGAGGAACAAGTGATCAACAGTCGTCTGCAGCAGGAGCTGCTGGAGAGAGAAACTCAGCAAATAATAAAGGATCATCAGATCAACCCTGTGTCGTTGTGTTTTGTGGATGGAAAGTTGGAGGAGCACTACTCCTCAGAGAAGGAGAAGCGAAGCGGAGCGGCCTTCTGCTGCTGCATCATAGTGCTCTTCTTCATCACAGCAATGGAGGTGTTTATAGACCCACTTTTGGCTGTCAACTATGTGACCTTTGCAATAGGAGAGGTGTTGTTGCTTATCCTCGCAGTGTGCTCCCTGGCTGCCATCTTCCCCAGGATGTTCTCCAAAAGGTTGGTGTCTTTCTCAGTGTGGATTGATCGCACACGGTGGGCCAGAAACACATGGGCCATGGCGGCCATATTTGTTCTCACCATGGCTGTGATCGCTGACATGCTGAGCTGTGTTCCACCTTCCCTTCAAGTCATCAACAGCACCTCCGGCCCCGTGCTGGAGTCACTTGGTGACCGAGGCTGTGCAGAGAATCCAAAGCACTACAGCTTCATGGCTGTGATGTCACTCATCGCCACCGCCATGTTGGTACAGGTCAGCCACCTGATTAAGCTGGGCCTCATGATGCTGGTCGTCACAGCAACTGGAGCTGTTAATATCTACAGCTGGAGGGACATTTATGACCTGTATGACTATATACAGTATGCCTCATACAGAACATCCATAGTGCCATCCAAGTACCTCATGACCATGATGATCATTGTCATGATGATTGGATTCTACTTCTTTGCCCGCCATTTGGAGCACCAGTCCAGGAAGCTGTTCCTGTGGAAGATCGGTGTGCATGACCAGAAGGAGAGGGTGTTTGAGATGAGACGCTGGAACGAAGCGCTGGTCACCAACATGCTGCCGGAGCATGTGGCCAAACACTTTCTGGGCACTAAGAAGAGAGATGAGGAGCTGTACAGCCAGTCTTACAATGAAATAGGTGTGATGTTTGCTTCCATCCCCAACTTTTCTGATTTCTACACTGAAGAGAACATCAACAACGGCGGCATTGAGTGTCTCAGGATTCTCAATGAGATCATCTCCGACTTTGACAGTTTACTGGACAGGGATGAGTTCCGCTGCATCACTAAGATCAAGACAATAGGAAGCACCTACATGGCTGCATCAGGACTCACCCCAGAGAGCAACACGAATGGATACAGCAACCGCAAGCCAGAGGACCAGTCACTGATCGAGCGCTGGCAGCACCTCGCTGACCTGGCTGACTTTGCCTTGGCCATGAAAGTCACCCTCAACAACCTCAACAAACAGTCCTTCAACAACTTCATGCTCCGAATCGGTCTGAATAAGGGGGGAGTTTTGGCTGGAGTGATTGGAGCTCGTAAACCTCACTATGATATCTGGGGCAACACAGTCAATGTAGCCAGTAGAATGGAGTCCACCGGAGTGATGGGAAACATCCAGGTAGTGGAGGACTGCTATGACATTCTAAAGGAGTATGGCTTCCGCTTTATCCGAAGAGGGCCCATAATTGTCAAAGGCAAAGGGGAGCTGCTTACCTTCTTCATGAAAGGAAAAGACAAACCCAGCAGCAATGGTGGTCCAGTGACCACTGCCCTTCCACACCAAGTTGGGGACATTTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250341 lncRNA upstream 3696 16724877 ~ 16726392 (+) True G184851
TU250330 lncRNA upstream 44009 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 119708 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 213755 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 228201 16495957 ~ 16501887 (+) False LOC120546561
TU250480 lncRNA downstream 189316 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 536735 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 544471 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 544471 17288851 ~ 17291556 (+) False G184995
TU250579 lncRNA downstream 649154 17393534 ~ 17397048 (+) True G185022
XM_039781919.1 mRNA upstream 44010 16671589 ~ 16686078 (+) False vegfab
XM_039781921.1 mRNA upstream 44010 16671591 ~ 16686078 (+) False vegfab
XM_039781920.1 mRNA upstream 46807 16671586 ~ 16683281 (+) False vegfab
XM_039781926.1 mRNA upstream 120362 16605386 ~ 16609726 (+) True rsph9
XM_039781814.1 mRNA downstream 1793 16746173 ~ 16763444 (+) True wdr26b
XM_039781862.1 mRNA downstream 21165 16765545 ~ 16779935 (+) True si:ch211-57i17.1
XM_039781861.1 mRNA downstream 21165 16765545 ~ 16779935 (+) False si:ch211-57i17.1
XM_039781864.1 mRNA downstream 21165 16765545 ~ 16779935 (+) False si:ch211-57i17.1
XM_039781863.1 mRNA downstream 21165 16765545 ~ 16779935 (+) False si:ch211-57i17.1
TU250012 other upstream 327985 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 761965 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 1013804 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 1013804 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 1066514 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 21165 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 81314 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 549274 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 597457 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 597457 17341837 ~ 17365977 (+) False map7b

Expression Profile