RNA id: XM_039781963.1


Basic Information

Item Value
RNA id XM_039781963.1
length 3738
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC120546775
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16730063 ~ 16744830 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTCTTAACCGGGTCCATACAACAGACACGGAGCAGTCTGCAGAGTACTCAGTGGAGTATTCAGTTCGGGTTCCCAGTGATCCGGGTCATGGAGCGGGTCGGACGCGTGAAGTGGCCGTGCTCCAGTCGAGCTGCTGCCGCTGCCTGCCGCGCGCAATGCGCCTCACTTTTGCGCCAGAATCACTGGAGAGAATTTACCAGAACTACTTCTGCCGACAGAGACAAGAGAACATGCTCGTGCTGGTGATGTTTGCTGCTCTTTTCAACagcttcatcatcatcatgtgcGCGGTGGTGTACACTCAGGACAAACTGGCGATGGTGGTGGTCGCAGCTGTGGCTCTGGCTGCGGACATGGTGCTCTACGTGCTGTCCTGGCGACAGAAGCTCCCTGCGTCGCCAGTCTCACGCGCAGCAGTGCCGTACATACTGTGGCTGATGATCACCGTCCACGTTTTATGTTACATTTTTCTGAATTTCCAGCGTTTCCCCCATGCCAGTGACTCTGTGGGCTGGCAGGTCTTTTTCAGTTTCTCCAGCTTTCTGACACTCCCGCTGAACATGGTGCCGCTGCTCCTGCTCACAGCCCTCTCCTGTGGGATATACACCCTGGTACTGGGGCTGACCGTGGCTCAAACTTTACAGGACAACCTGCAGGGGCCCATGCTGGCGAGACAGCTCCTAGCCAACGTGATGCTGTACCTGTGCGCAGCCACAGTGGGTGTGATGTCTTACTACATGGCGGACAGGAAGTACAGGACAGCTTTTTTGGAGGCCCGTCAGTCACTAGAGGTCAAACTCACGCTGGAGGAGCAGAGCACCCAGCAGGAGGAACTATTACTGTCCATCCTGCCAAAACACATCGCTGACGAGATGCTGCAGGGCATGAAGAACCAGGCCGATCAGAATGAGGGACAGCACCAGCAGTTCAACACCATGTACATGTACCGCCATGAAAACGTCAGTATCCTGTTTGCTGACATTGTGGGCTTCACCCAGCTGTCCTCAGCCTGTAGCGCCCAGGAGCTTGTAAAGCTGCTTAATGAACTGTTCGCCCGCTTTGATAAACTGGCAGAAGAACATCACCAGCTGAGGATAAAGATCCTCGGAGACTGTTACTATTGCATCTGTGGTCTTCCTGACTTCAGAGATGACCACGCTGCCTGCTCCATAATGATGGGCCTAGCGATGGTAGACGCCATATCGTACGTGCGAGAGAAGACTAAAACTGACGTGGACATGCGTGTGGGCGTTCACACGGGCACCGTGCTGGGAGGAGTGCTCGGGCAGAAGAGGTGGCAGTTTGACGTTTGGTCCACAGATGTCACTGTAGCCAATAAGATGGAATCTGGGGGGATTCCTGGGAGAGTGCATATTTCCCAGACCACCAAGGACAGTCTGCATGGAGAATTTGAGCTGGAGCCAGGGGACGGCGGGGAAAGGTGCGAGTACCTGCTGGAGAAAGGCATCGACACTTACTTGGTTCTAGTGTCTAAACAGGTGGCGAATGGGCACAGTGAAAATAAACCAGGCACATTGTCCAACAGAAATTCAGACAAGTTGATCAGCACTACAGAAACCAATTGCAATGCAGCATCACCCCAATCCACACCCACTGAGTCTAAACAGGAGAGGAATAAGATGGTCGAGGAACAAGTGATCAACAGTCGTCTGCAGCAGGAGCTGCTGGAGAGAGAAACTCAGCAAATAATAAAGGATCATCAGATCAACCCTGTGTCGTTGTGTTTTGTGGATGGAAAGTTGGAGGAGCACTACTCCTCAGAGAAGGAGAAGCGAAGCGGAGCGGCCTTCTGCTGCTGCATCATAGTGCTCTTCTTCATCACAGCAATGGAGGTGTTTATAGACCCACTTTTGGCTGTCAACTATGTGACCTTTGCAATAGGAGAGGTGTTGTTGCTTATCCTCGCAGTGTGCTCCCTGGCTGCCATCTTCCCCAGGATGTTCTCCAAAAGGTTGGTGTCTTTCTCAGTGTGGATTGATCGCACACGGTGGGCCAGAAACACATGGGCCATGGCGGCCATATTTGTTCTCACCATGGCTGTGATCGCTGACATGCTGAGCTGTGTTCCACCTTCCCTTCAAGTCATCAACAGCACCTCCGGCCCCGTGCTGGAGTCACTTGGTGACCGAGGCTGTGCAGAGAATCCAAAGCACTACAGCTTCATGGCTGTGATGTCACTCATCGCCACCGCCATGTTGGTACAGGTCAGCCACCTGATTAAGCTGGGCCTCATGATGCTGGTCGTCACAGCAACTGGAGCTGTTAATATCTACAGCTGGAGGGACATTTATGACCTGTATGACTATATACAGTATGCCTCATACAGAACATCCATAGTGCCATCCAAGTACCTCATGACCATGATGATCATTGTCATGATGATTGGATTCTACTTCTTTGCCCGCCATTTGGAGCACCAGTCCAGGAAGCTGTTCCTGTGGAAGATCGGTGTGCATGACCAGAAGGAGAGGGTGTTTGAGATGAGACGCTGGAACGAAGCGCTGGTCACCAACATGCTGCCGGAGCATGTGGCCAAACACTTTCTGGGCACTAAGAAGAGAGATGAGGAGCTGTACAGCCAGTCTTACAATGAAATAGGTGTGATGTTTGCTTCCATCCCCAACTTTTCTGATTTCTACACTGAAGAGAACATCAACAACGGCGGCATTGAGTGTCTCAGGATTCTCAATGAGATCATCTCCGACTTTGACAGTTTACTGGACAGGGATGAGTTCCGCTGCATCACTAAGATCAAGACAATAGGAAGCACCTACATGGCTGCATCAGGACTCACCCCAGAGAGCAACACGAATGGATACAGCAACCGCAAGCCAGAGGACCAGTCACTGATCGAGCGCTGGCAGCACCTCGCTGACCTGGCTGACTTTGCCTTGGCCATGAAAGTCACCCTCAACAACCTCAACAAACAGTCCTTCAACAACTTCATGCTCCGAATCGGTCTGAATAAGGGGGGAGTTTTGGCTGGAGTGATTGGAGCTCGTAAACCTCACTATGATATCTGGGGCAACACAGTCAATGTAGCCAGTAGAATGGAGTCCACCGGAGTGATGGGAAACATCCAGGTAGTGGAGGACTGCTATGACATTCTAAAGGAGTATGGCTTCCGCTTTATCCGAAGAGGGCCCATAATTGTCAAAGGCAAAGGGGAGCTGCTTACCTTCTTCATGAAAGGAAAAGACAAACCCAGCAGCAATGGTGGTCCAGTGACCACTGCCCTTCCACACCAAGTTGGGGACATTTGAATATTCTATCCTGGTGAAAATCCGTTAACATAAGGATAAGCTGAATTATCCACTCTGTTCAATTTCTTTCATATACACAGGTTACCTACATAGATCTTTTTCATAAGCTCTGTAGAAATGTAAAGCATATGGAAGTAGAccaacacaacaaaataatacTATTGTGAGCATTACAACTGTGAAATAGCATTCCGCAACAAAGGAATTTTATAACAGAAACTGTTTCTGTATAGTTGTACATAATTCAGGAATACAGTTGACGAGACGGAGCTCCTGCATTAAAGATTTAGATCATTTTGCACTTGATTCAGAGTGCTATGAAAATTATAAGCTTGGAACAGATATATAAATTCACTTCCTTTGTTGTTTTACCTTGAGTTCAGGTTTTGTAAAATAATGTAGCTTAATCACACTGTAAATACTGTGTTAATAAAACAAGTTTGCACTATA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250341 lncRNA upstream 7585 16724877 ~ 16726392 (+) True G184851
TU250330 lncRNA upstream 47898 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 123597 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 217644 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 232090 16495957 ~ 16501887 (+) False LOC120546561
TU250480 lncRNA downstream 188866 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 536285 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 544021 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 544021 17288851 ~ 17291556 (+) False G184995
TU250579 lncRNA downstream 648704 17393534 ~ 17397048 (+) True G185022
XM_039781919.1 mRNA upstream 47899 16671589 ~ 16686078 (+) False vegfab
XM_039781921.1 mRNA upstream 47899 16671591 ~ 16686078 (+) False vegfab
XM_039781920.1 mRNA upstream 50696 16671586 ~ 16683281 (+) False vegfab
XM_039781926.1 mRNA upstream 124251 16605386 ~ 16609726 (+) True rsph9
XM_039781814.1 mRNA downstream 1343 16746173 ~ 16763444 (+) True wdr26b
XM_039781862.1 mRNA downstream 20715 16765545 ~ 16779935 (+) True si:ch211-57i17.1
XM_039781861.1 mRNA downstream 20715 16765545 ~ 16779935 (+) False si:ch211-57i17.1
XM_039781864.1 mRNA downstream 20715 16765545 ~ 16779935 (+) False si:ch211-57i17.1
XM_039781863.1 mRNA downstream 20715 16765545 ~ 16779935 (+) False si:ch211-57i17.1
TU250012 other upstream 331874 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 765854 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 1017693 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 1017693 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 1070403 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 20715 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 80864 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 548824 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 597007 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 597007 17341837 ~ 17365977 (+) False map7b

Expression Profile