RNA id: XM_039782032.1


Basic Information

Item Value
RNA id XM_039782032.1
length 2724
RNA type mRNA
GC content 0.44
exon number 2
gene id slc25a29
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15277585 ~ 15286851 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTCACGATGACATCTATGCAAGGTATTTGGTTTGTACAAAGGCATCGGATCCCCCATGATGGGCCTTACATTCATCAATGCTATAGTGTTTGGTGTTCAGGGAAACACCATGCGGTTGCTGGGACAGGACACCCCCATGAACCAGTTCCTTGCTGGTGCAGCAGCAGGTGCCATCCAGTGTGTCATCTGCTGCCCCATGGAGCTGGCTAAAACCCGCATGCAAATGCAGGGTACTGGGGAGAAGAAGTCTTCTAGGAAGTTGTACAAGAATTCCCTGGACTGCTTGGCACGCATCTACAATCGGGAGGGTCTGCGGGGCGTAAACAGAGGCATGGTCACGACATTAATCCGCGAGACACCTGGCTTTGGAGTGTATTTCCTGGCCTATGATGTGATGACGCGCAGCCTTGGCTGTGAGCCGGATGACCGCTACATGATCCCCAAACTGCTGTTTGCAGGGGGCATGGCTGGCATTGCCTCCTGGCTTTCCACCTACCCTGTGGATGTGATCAAATCGCGGCTGCAGGCAGACGGGGTGGGTGGAGTCAACCAGTACAGTGGCATCGCTGACTGTGTGCGACAGAGTATCAGGAGAGAGGGCTACATGGTGTTCACACGAGGCCTCACCTCCACGCTGCTACGGGCGTTCCCTGTGAATGCAACTACCTTTGCTACCGTCACCCTTATCCTCATGTACGCCCGGGGGGTGGAGGAGGGGCCTAAAGACTGTGAGCAGGCTCAGCCAAGCCACCACACACAGATAAAGCAGCAGGCCCAACCCTCCAGCCTGTGACAGCACAGAGGTCTCAACCTGGGCACTTTACAGGAGCATGGAttatataaacatacaaaccCTTTATAAATGTCTGACTCAGTCTCACACCAGACCCcccatttccaattttgagaaaaaaaaacctggttTATATAAACACGTGTTTTTACTTTCATGTCAAAAAGGAAACGAAGGCaactatatttatttttagctATAATTTAAGTTTTAGGTTTGCCACTGAAGATGCAGACTTGTACAAGGGGATGGTGTTACCTATGATAAGATGGGGAAAATGGAGCTATGAGATTCATGAAAGTTTTGAACACAGCTTTTATCTGTGAGAATGATCTTGTGTGACACTGATTATGACTTGTTACTGAGCCACAAAACTAAGGGTGTGGCTACATGGTGTGTACAGTGTAGACACTGAAGGTTGATCTATCTTGAAATGTGCAGTGTTTCGCTGCAcctgtatatatcattggttttagttctgtttttaaatgtcaattgGAGACATTTCCCTGCCTtataatatgacattttttattttgtttaaggAAGCTGAAGCACCTGTTTGTAGCTGAACTGTATCCTCTGAGGAGCCAAGCAAGAGGGCGATGGAATGTAGCATTTGATAAGTACAAAGAACTTATCACTTGTGTCTGCTTTCTAACCAAATAACATATTGCAGCTATAATCTAATCCTAACTAAAGCACTATTACTCCATACAGCACATGTCAGTACAGAAATCCACTGTTCTGAATGTATAGTGGGTCTATGTGTGAATCAGGATGGTAGGTGGTGTTAGGTCTTGTTTGGTCTgtttagcatgtttgttttttttaataatgtgaAGTGTTATCATTGTAACTGTACTACTGTAATAAAGGCCTGATCCAGAAGTGGAACATGGCGCTACATGTGGGTGTAGCACCACACTTGTTCCactattttactttatttttgtaaattttagttttaaaataGCTTTTAAAGCTGCACATTATATGATTATTGTAGGGTCAGAAATGCATGCTAGGTGGTCTCTCTTTAAAGTTTTAGAAAAAGTTAAAATTGGGAGGGTCAGCATTTAGGATGGCCCTCATTCCTttttctctcccacagacagcacttttttttaactgcctAGATACGCCTTCCCACATTTCTGTTTGGAAGTCTTTAATTAGTGATGCCACTAATTGAGAATGCCAGCCCAGTTTATCATATTTGCTGCCCataggtgctgcctgagcaagcacagcccACCCAGGGGCTTGTTctgaatttggttgaccaatcacaacagagtgggccagctgaccaatcagagcagactgtaGCTCAGACTgtaggcctggcaaactcgattcTTTTTAAGGAttcaggttattctgagtcactcactaaactgatccgggttgtgcgagtcacttgtCAGTATTGATCTCATACTACTCATAGCCGGCTTATTCGTGCGATTGACTGACTCATGCGAGAACTCGTGAATCATCGATAACTTGCTAGTCATCAACAACTCACTAGTCATCGAGGACTCTCGAGTTAGTCCCATGGTCtgcgagcttgcaatgtttccagCTCTGAGTCTGTGGGTCGGGAAGTTCCTATAACCTGTCTtggactgtctctctgctcactcagtcgCTTGAGATGACTTGTGGAGTTGTTGTTGCCTATGAAATTGTAAGTCATAAAGCTtttggcagctaagatggctaggactagtagtagctagggttgcaaaattctgggaattttcaaagttggaaactttccatgggaattaatgggaataaactggatatttttaatattgattGTTATAATACTGTTAGTCTATAACAGGGCTAATACATAACCCATTGCTATTATTAACCtttgtgtgttaattgtatagcccactaaccatagtaaatcaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637012.1 lncRNA upstream 18829 15257133 ~ 15264717 (+) True LOC120547009
TU249768 lncRNA upstream 81031 15202306 ~ 15202515 (+) True G184431
TU249755 lncRNA upstream 109416 15173690 ~ 15174130 (+) True G184419
TU249709 lncRNA upstream 151775 15129476 ~ 15131771 (+) False hsp90aa1.1
TU249711 lncRNA upstream 171941 15110243 ~ 15111605 (+) True G184389
TU249801 lncRNA downstream 33167 15320018 ~ 15320239 (+) True G184461
TU249803 lncRNA downstream 34895 15321746 ~ 15322122 (+) True G184463
TU249805 lncRNA downstream 35724 15322575 ~ 15322888 (+) True G184465
TU249814 lncRNA downstream 191640 15478491 ~ 15479080 (+) True G184474
TU249823 lncRNA downstream 206353 15493204 ~ 15493527 (+) True G184481
XM_039782230.1 mRNA upstream 109964 15142703 ~ 15173582 (+) True ppp2r5cb
XM_039782231.1 mRNA upstream 109964 15142703 ~ 15173582 (+) False ppp2r5cb
XM_039782232.1 mRNA upstream 109964 15152400 ~ 15173582 (+) False ppp2r5cb
XM_039782224.1 mRNA upstream 142153 15135367 ~ 15141393 (+) True hsp90aa1.2
XM_039782225.1 mRNA upstream 148686 15130317 ~ 15134860 (+) True hsp90aa1.1
XM_039780985.1 mRNA downstream 2823 15289674 ~ 15293252 (+) True LOC120546207
XM_039780969.1 mRNA downstream 9430 15296281 ~ 15300707 (+) True vrtn
XM_039780970.1 mRNA downstream 9765 15296616 ~ 15300707 (+) False vrtn
XM_039782510.1 mRNA downstream 301232 15588083 ~ 15597893 (+) True dll4
XM_039782709.1 mRNA downstream 315484 15602335 ~ 15604166 (+) True chac1
TU249525 other upstream 754176 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 902359 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 1162032 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 2036130 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 2133468 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 2823 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 15074 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 373722 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 408093 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 408093 15694944 ~ 15716284 (+) False dpf3

Expression Profile