RNA id: XM_039782080.1


Basic Information

Item Value
RNA id XM_039782080.1
length 3165
RNA type mRNA
GC content 0.46
exon number 6
gene id slc2a12
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17615329 ~ 17623112 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCACCGACACTGGTAACATAGTTGGGAGCAGTGAAGAAGTAGTCGGACAAGTCTGGGATAGAAAGCGAATGGACCGATAAATACCAGTCAGCTAACAACAGAGACACTGCCGGGACGTCAGGTGGTTAACGATGGACCCCAACAGTGAGACCGAGAAGATGACTTCTAACCCCTCTGAGACACAGAAACTGGCTCCACCCAGAGGCCCAGGCTGCAGCTGGCTGGTGATCGTAGCGGCTGTAGCGGCCTCTCTGAGCGGCTTGATGCTGGGCTATGAAATGGGCCTGACCTCTGGAGTCCTGCTGCAGCTGCGTgacttcctctccctctcctgccgGCAACAGGAACTGCTGGTCAGCTCCCTCCTGCTCGGCGCTCTCCTCATCTGCCTGGTCGGAGGTCCTATTCTGGATCGCTACGGCCGCCGCTGCTCTTTGCTCCTGAGTGCTGCCCTGGTGATCGGAGGGAGCATCGTGCTCATCGCAGTTACGTCACTTGTTGCACTCACACTGGGCCGGGTGATAGTCGGCATGGGAACATCGCTGTCAGGGACGGCAGCGTGTCTGTACATTGCAGAGATCTCACCGAGGGAGAGGAGGGGTCTTCTGGTGACGCTGTATGAGCTGATGTTGGTTGTGGGCGTAATGCTGGGATTTAGCTGTAGTTACGCTTTTGCTACTTTGCCCTATGGCTGGGCGTATACATTTGGACTAGTAATCCCCCCAGCGCTGCTACAGATCAGTGTACTTGTGTTCCTACCACCCAGTCCACGCTTTCTGGTCACCCAGGGGAAAGTGGAGCAGGCCAGGATAGTGCTGGCCAGAATGAGAGGTGGGGTTCAGGAGCATGTAGAAAAGGAGCTCAGAGACATCCAGGCAGGACTTAAAGAGGAATCAGAGCATAGTTTCTGGGAGTTGTTCAGTAGCAAGGCCAACTTGCGTTCCCGGCTGCTAACAGGTATGGCCTTAGTATTCCTTCAGCAGGCTACTGGTCAGCCCAACATCCTCTCCTACGCTTCACCACTTTTCCGCAGTGTAGGCTTCAACAGTGATGCCGCAGCAACCTTGGCCTCCACAGGGTTTGGAGTTGTTAAAGTAGTTGGCACCATCCCAGCCGTGTTGCTGGTCGACCGCGTGGGAACCAAGAGCTTTTTGTGCGTGGGTGCTGTCGCAATGGGAATGTCGCTAGTTGCACTTGGTACATTGACACTGCAAAGCCACACTCATCTCACCAGCCTGTGTAAAAGCCACACTATACCAAATCACACAATTACGCCGTGGGATTTCAACCAAACCTCTATAGACTTGGACAACAGTGACATTTTTTCTGCTGACCTCCCCAGCCAATGGAACAGTGAGGAGGCACAGCTAACTAAACGAGAGGGTGATGGGATTGGGGAGCCAGGAGGAGGAAGTACTTCCTTTCTGAAGTGGGCATCATTGATCAGCTTGCTGGTGTTTGTGGCAGCCTTCTCCATTAGCCTTGGACCAATGGTGTACGTGGTTCTCAGTGAGATCTTTCCGATGGGAGTCAGAGGCAGGGCTGTGTCTGTGGTGTCGGCTGTAAACTGGGCCACTAACCTGCTCATCTCCATGACCTTCCTAACAATTACAGAAAAGATTGGCGTTTCCAATGTGATGTTCCTCTACGCTGCCATGAGTTTTGTTCTACTGGTGTTTGTCATCCTCTGTGTCCCTGAGACCAAGGGTCGCACACTGGAGGAGATTTCGAAAGAACTGGCTAAGAAGAAGCATTTTGAGGTGAGGCTCTGCAGGCAGGTTCAGCCTCAGGAAAGCCTGATCCAGGGCAGCAGTACGTCCACAGAGATTCCAGAAAACGTCTGACTTTTTTGTTTAACAGAGCACAACTGTACACCTCACCTGAAGATGAGTCAAGAGCAAGGATCAACAAGGACAATATATTAGCACTGTTAAGAATTTGGGGTACAACTGGTACATCTCACCCACATCTGTACGTTGCTGCAGTTCCAGCTGATTCCTGTAATGAGGTCTGTGTCACGTATACTGTAGGTCCTTCTAGCTACATGCTGTATGTAACAGAAGAAATCAACAGGATAGGAATGGGGTAAATTACATATGCAGGAAAGAACTAAATAATGCCGAAGTATTTGTGAATTTTCTCAAATGAGGATTTCTCAGGGATCACTCTTGCTTGTTAAAAGCCAGTAAAGAAAGGTAAACAATAGGGATTAATTATGTGATTACACAAAATATAGATTATTTAATTCCTTCCTTACTTTACCTCTCCATTTAAACATACAGCTCCAATAATGCAGAAAGGAATAAACTCCAGAATCAATGGACTTCCCACCAGCCAGTAGAACTGATGAGGCCCCTTTGGATGAATGTGCAAACTGTACTACtagacatttttaatttttttccattttgacCTGACATTGTGATGATCGACGTATCACAGGGAAATCAAAGGTGCACTAAACAATCAGACACTAATCACTTTAAATGTATGTGTAtctaacatgtttttaaattgcaAAGAAATTCCTTTAACATGACATTTGTATGCTGCTCCCTgtcaaatgtaatgtaataatactAACAGGGCTCAAACCAGACATGTCAGTTATGCTACAAAACACACTCTAATCTACATTGTGATAGAAATATGGATAAAGGCCACAGTAGTCTAACAATAGTAAGAGTCCTGTGTCTCCtcttttacattttagttgaacGAGCGACAAACAAAATTATGAATCAGTTTTACTGTATGCCTGGCTGCTGAATCCTAAAAAAACAGCAGTTGGGCAAAGAAATACTAAAATAATCAGGTCCGTTAGTAATATTGGCCAGCGTATAACTAGTACTGTTGTAGTGTAAGaagtgtgaaaatgtatgttttttttttttttactcgtgTCAGTGATGCCAAACTTATAGTGGGATGTTTTACTGCAAGACAGAATGTCTTGTGTGGCCCTGTTCATTCTCAGATCTGCACTTTGATACCTTTCCTGATCTTTTCTTAATGTTGGAACATGTAGACTGGTTTTAGTAGTCTGTCACAACACTGAAAAGCTTGGATAACTATTGAAAGTGTTTCACTCCACCTGTAATCAGGGAATGCTTTGGACAAAAAGATGAAAAGATTAACATGAGAGTAAAACAAAGTGACCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250710 lncRNA upstream 61433 17553442 ~ 17553909 (+) True G185112
TU250704 lncRNA upstream 64237 17550558 ~ 17551105 (+) True G185107
TU250700 lncRNA upstream 67053 17535854 ~ 17548289 (+) True G185103
TU250659 lncRNA upstream 145767 17468552 ~ 17469575 (+) True G185067
TU250650 lncRNA upstream 162280 17451766 ~ 17453062 (+) False LOC120546214
TU250737 lncRNA downstream 10007 17633119 ~ 17667720 (+) True G185134
XR_005636848.1 lncRNA downstream 13840 17636952 ~ 17654361 (+) True LOC120546270
TU250739 lncRNA downstream 17849 17640961 ~ 17661813 (+) True G185136
XR_005637003.1 lncRNA downstream 46054 17669166 ~ 17671477 (+) True LOC120546942
TU250765 lncRNA downstream 53613 17676725 ~ 17693634 (+) False LOC120546940
XM_039781637.1 mRNA upstream 19288 17560853 ~ 17596054 (+) True sgk1
XM_039781639.1 mRNA upstream 19288 17587790 ~ 17596054 (+) False sgk1
XM_039781640.1 mRNA upstream 19288 17589579 ~ 17596054 (+) False sgk1
XM_039781638.1 mRNA upstream 19288 17591446 ~ 17596054 (+) False sgk1
XM_039781170.1 mRNA upstream 99759 17506954 ~ 17515583 (+) True aldh8a1
XM_039781107.1 mRNA downstream 29390 17652502 ~ 17654361 (+) True tcf21
XM_039781339.1 mRNA downstream 48401 17671513 ~ 17686499 (+) True LOC120546414
XM_039782210.1 mRNA downstream 51281 17674393 ~ 17677036 (+) True LOC120546940
XM_039782456.1 mRNA downstream 86687 17709799 ~ 17758414 (+) False eya4
XM_039782454.1 mRNA downstream 86687 17709799 ~ 17758414 (+) False eya4
TU250558 other upstream 249365 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 249365 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 319641 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 782028 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 838741 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250758 other downstream 46060 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 59446 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 293741 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 397851 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 397851 18020963 ~ 18052071 (+) False fndc4a

Expression Profile