RNA id: XM_039782180.1


Basic Information

Item Value
RNA id XM_039782180.1
length 3104
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC120546927
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 20617250 ~ 20622631 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGCCAACATTAGCCGGCCAGTGTATGTTTGCTTGCCATTGTTACAAAAACAAGTGGATTTAAtagtaaaagaaaaattgaCAACCAACTGGCTTGCAGTACAGGGGTGTATAATTACTGTACAAAGTCTCTAAAGCTTGTCATCCTCGGTTTGGTACAGTGGTGTTTGTTGACAGCAGATTTTCTCACAGTCACCCGCAGAAGCTTTTCCACCCCTTAAGGTCTGAAGATGGATGAGGGCCATGGTCACTGTATGTCCTGTATGAACCAGAGATGCATGGTCAGACCTCAACCAGGCATTTCTTGTGATCTTATCACCTGTCCTCTGGTGTGTGGGGCTGTATTTCACTCCTGCAAAGTTGATGAGCACCACCTTATGTGCCCACTGATGAGGGTGCCCTGCCTAAACAGTGGCTATGGTTGCCCTGCCACCCTCGTGCGCAACCAAATGTATGCACACCTTGAAGTGTGTCCAGCTGGAGTGGTGTGCTGCACTATGGAGTGGAACAGATGGCCAGTTAGCTGCCTGGACTATACTTCCTATGAGAGCCTGAGCCGtggggtggaggaggtggagcagCTGGACATGGCACTTGCTCTTCAGGACCAGCGTACACTACTTGAGTCGCTCAAGGTGATTGCCATGGCACCAACTGCAGAAGGAGAGCCACTTGTCCCTGTTAGTAAGGAGATCAGTGCAACAGATTCAGCTTTGCTTACATCTGCCTCTGAGGCCTCCACCATTATTGAGTCACCTTCACAGTCAATATCCTCACATCAGCCAAAACCTCCCCCACCAGGCTCGGCGAAGGAGAGAATTGCCTGCGGAATTAATGGCTTGAACGAGGAGCACTTCAGTAAACTCTACGAGGCCACAGTGGAGACTGCAAGAAGCTTAGCTGCTGCGTTGGACTTTGTCAGTAGTGCCAACTCTGTTGACAGCAGCACAGTGTGTGTGAACAGAGGAGAAGCTATGCAGAAGAGTAAACCGAGCAACAATGGGGACCTTAAGACTAGACTGGAAGACAAAATGCCTGTAGCCGCTGATGGTTTGAataaaagagagatggaggaacAGAGTGTTTGTTCTAGCTGTTTGAGAGAAAATGGGGCTCTGAAAGGAACAGATCTAAAGattgtaaaaacaacaaatggaTCACTGTCAGGAGCAATGGAGGCCTGTCTGGAGACAGCCTGCCTTGGTGAGGTACACAATGACATGAATGCTGGGGTTTCTCAGGAGCCAGTTACCCCTCTACTGGCATCTCCAGTGCATGTCAGCCAGGGTGTGACACAGAGGGCTGGTCATGTGGTCCTGGAAGATAGGGGGCTAGTTATTTTAGAAAACCACGGCCCTGAGCGCAAGTTCCACAACTACCATTTTTTTAGGGGCCAGGGCCAATGTTCATTATCTAATGGACGGATAGGTTACATCCCAGACAGGTCACTGTATAGATTGCGACCCAAAATGGAGGACAAAGCCGTAGATACCTCGGATCTGGAACAGGATGATGACCCTATGGGTCTCGGAGAAATTGATCTGATCACAGCAGCGCTGCTCTTCTGTTTAGAGGAGTCCCGAGAGTGTAGAAAGATCTCTGACACAGTCTATGTTGATGGCTACCGTGTTGACTTTGGCACACAGACTTTCACTTTTCCTGCAGCAATCTTGCTAACCAACACTAGAGTGGGTGAAATTGCCTCTGCATCTGCCTGCGACCATGCTGCCCCCCAATTCTGCTACCCAAGCCCTTTCCGCACTCTCCGCCTCGGCCTTGTCCTGGAAGCTCTGGAGGTCGAGGCCGTCCCACATAACCGCTACCTCCCTTCTAACCCCCGCTACCAGCACATGTTCCCTTTCGTCTGTGGCCAGTCATTGCGCCGGGACCAGTTTTCTTCCCATTTCACAAATGTCCACGGTGACATTCACGCTGGTCTCAATGGTTGGATGGAGCACCGCTGCCCACTGGCATATTATGGCTGCACATTTTCTCAGCGGaggttttacccatccacccaGGGGGCCAAAGTGGTTCATGACAGGCACCTCAGGTCCTTCGGGGTGCAGCCTTGCCCAAGGGAAAAACTTTCAAGTGACTTCCAGTCAGACCAATTTAGTGGGCTTCCCATTGAGATACTGTGGCACATAGCTGGGTTCCTTGACAGTTTCAGCCTGTGCCAGCTGTCACTGGTGTCACGGACTATGAGGGAGGTGTGTGCCAGTCTCCTCCAGACCAGGGGCATAGTGGAGCTGCAGTGGGAGCGAAGACAACGTCCTGGTTCCCCTGGCACTGTGACATGGCAGATCAAAAATAGAGTGTGGAGATTCAGCACTGCCTTCAGCCCTGTGTTGTCATGGGGTTTCACTAATCTCCCCAGCATGTCGGACCATCTGAAGAAGTGCCACTTCAACATAGTGGAGCACAAGACCGAGCCCATACCCCTTCCTGCCATGTGTACTGCACGAGATGGACACTCGCTGCGTCGCGTCCTGCGTCACATTAACACCTGACCAAACAACGCTGACCTCTCGTAGCTGCACGAGAAAACGAATAACTTCTCCTGTATTACACTAGATTATGAAGAAGCCTTAATGAAAGAACACCTTACTTGCCACAATGAAGGTCTGTTGTTGTGGGTGGCCCCTATGTGGAGAAAAGAAACACATAAGCATTTAGCTTTGCATGGATTTGTGCTAAAAATGCGTCCTTATTctgaaacattaaaatatattttcttgaaGACAAATATgcacaatatatttatattattctatgtgatatactgtataaatgtGTTCACTATCTTGCCTTTTAGCATAGCCATGGGGAAAAAGCAGTTTGTTGGTTATATTGCATTATTTCTGTGTCAGAAGTTATGCCAGCACTTTAAACAAGATTTGCCACTTCCTCCTGTTGATATGTGACCCTAAAGGATCTAGTCTTTCTGATCACTATAGCGGGTGTCAGCCTATGGACGTCTGTTGTCTCGGTTTGTAGGATGTCAGGACACGAGTCTTAACAGATGGATATTAATATGAGGATAGCCCAATAATGCATGTAATTTACTACCATTACCATTTAATAAAGTCTTTACAGCCTTT

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636841.1 lncRNA upstream 257865 20261785 ~ 20359609 (+) False LOC120546242
XR_005636840.1 lncRNA upstream 328718 20261785 ~ 20288756 (+) False LOC120546242
TU251786 lncRNA upstream 328719 20261809 ~ 20288755 (+) False LOC120546242
XR_005636839.1 lncRNA upstream 330610 20261785 ~ 20286864 (+) True LOC120546242
TU251724 lncRNA upstream 637384 19945093 ~ 19980090 (+) True G185869
XR_005636997.1 lncRNA downstream 3917 20626548 ~ 20628265 (+) True LOC120546929
TU251913 lncRNA downstream 70539 20693170 ~ 20702644 (+) True G186025
TU251924 lncRNA downstream 123686 20746317 ~ 20758806 (+) True G186035
XR_005636824.1 lncRNA downstream 366674 20989305 ~ 20991418 (+) True LOC120546176
TU252007 lncRNA downstream 397190 21019821 ~ 21023878 (+) True G186088
XM_039781448.1 mRNA upstream 624588 19977864 ~ 19992886 (+) False slc22a16
XM_039781447.1 mRNA upstream 624588 19977864 ~ 19992886 (+) True slc22a16
XM_039781449.1 mRNA upstream 624588 19982401 ~ 19992886 (+) False slc22a16
XM_039781446.1 mRNA upstream 624588 19983274 ~ 19992886 (+) False slc22a16
XM_039781451.1 mRNA upstream 673443 19919473 ~ 19944031 (+) True cdc40
XM_039782183.1 mRNA downstream 6210 20628841 ~ 20638714 (+) True epm2a
XM_039782184.1 mRNA downstream 6211 20628842 ~ 20638714 (+) False epm2a
XM_039782185.1 mRNA downstream 6598 20629229 ~ 20638714 (+) False epm2a
XM_039782910.1 mRNA downstream 255849 20878480 ~ 20881587 (+) True LOC120547338
XM_039782177.1 mRNA downstream 268777 20891408 ~ 20928761 (+) True mthfd1l
TU251678 other upstream 757269 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 969318 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1078166 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 1322112 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 1363148 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2955747 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2955747 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 3456972 24079603 ~ 24083104 (+) True G186975

Expression Profile