RNA id: XM_039782185.1


Basic Information

Item Value
RNA id XM_039782185.1
length 2440
RNA type mRNA
GC content 0.41
exon number 4
gene id epm2a
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 20628841 ~ 20638714 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCTGTGGATCGGCGACGTGCAGCTGGCAGAGCCGTTCAAAGACACACTGTGGTTCAAGTTCGTCAAAAGAGTCCGAGGCACTTATATCTGGGAAGGGTGTCTTCTTTGTCACCAGGCAGCGGTCCAAGCCATGACAGATGTTGTTCATATGATGAGAGGAACATCGTGGATGGAGTGTACTGCCATCCGATTGGTCACTGGATAGAGGAAACAGGACACACAGATGAGATGAAACACACCACCAACTTTTACTTTAGTGTGGCTGGTCGGAAGGCCATTCATTTCTCCAGGGTGCTGCCACGTATTTGGCTGGGCAGCTGCCCTCGACAGGTGGAACATGTGACTATAAAGATGAAACATGAATTGGGGATTACTGCAGTGATGAACTTCCAGACAGAGTGGGATGTGGTGAACAACTCCAATGGCTGCAGGCGCAACCCTAGGGAAGCCATGACCCCGGAGACCATGATGCATTTGTACAAAGACTGTGGccttgtgtatgtgtggataCCCACACCTGACATGAGCACTGATGGTCGGATCCGGATGCTTCCCCAAGCTGTATTCTTGCTCCATGGTCTCTTGGAGAATGGTCACACTGTCTATGTTCACTGTAACGCTGGAGTAGGCAGGTCGACGGCAGCTGTGTGTGGCCTGCTTATGTACGTCCTTGGCTGGAGCCTGAGGAAGGTGCAGTACTTTGTTGCAGCCAGAAGGCCGGCAGTGTACATAGATGAGGAGGCTTTAGTCCAGGCTCAGGCAGACTTCATTCAGAAGTTTGGACAACTCCGATCATCCATCTCTTACCCAGAGACATGAGACATTGAGTGTCCTAATAATGAAGTCTTACAGTTATGGAAAGCGTTACTGGACTGGACTCCTTTAAACTACAATGATTCGTGAcaatgtgtgaaaaaaaatatactgtatagtcaGTGTGAGAGGTGCCAGAAGGTGAAATAAGCTGTGGCAAGAAAATTAACTTCTTTCTACTTAAATCTAATGTAAGTAAATGACCCACTTCAGCTGAATGGCTTTCGAAATCTGGTTGAGCCCCAAGTATCTGGAGAGAGTTCCGCTGTCTGACAGCATAGATGTTCCAAGCAATTAATCCTAATGTGATGTGTTagcttttttttacttcaagaTTTACCCTCTGCAATTTAGCACATACAGTTGCAAATTGTGCACTTGAAGTCAGCTTTAGGACACTATATTAGTCGTTTTCAGTAAATGTCTGCAGGGGCGCTTGGAAAGACCTATTCGTTTAGCCTTTTTTTCTAATGATCAATACATagttgacattttgagaaagcAACTTTAAGCTGATGTGTTAAACAGCAATGAATGAGAATGAATAACAGCaaagaaatatatacagtatatcacaatACTACCTATACCGCTGTTTGCTCTCATCCCAAAAGTTGTGCTCCTCAGTAAAGGCTTATTCCACAGTTGCTATTGCATAATTATGTATCAAGTTTGaggatattttttatttcagaaggaaaaaaaaaatcctttcttCTTTTGGAAAGAGCTCTTAATGCTGCATGAAAATAGCACTCCTTGCCAAAGCAACAACTCAATTCTTAAAACCAAAATAACAACAATGCCTCTCCCCCTCTGTCAGAGAGGTATTCAGCTCCCAGACATTGAAGAATACAGCTCCACCCCATCTCTCTCAGCTTGATAGCAtttcatctttatttatttatacgaCAGATGCTATTCCGACCCATCTcccaaataacaaaaacaacatccCTGCCAGACCATTTTAATGCATACATAAGAAGATTATTGGAATAGTGTTTGTTGTCAATTGTGAACGTCTGCCTCGATTTCTGTTAAGGATATATTGCTTTTTTAAGATACAGTGTTTGCTATATCCTGTCCCTGATTTAAGAAAGTTAGTGGATTAGAGAGGAGGAAATACTTTACTTCTTAAGCACAAGTCATATTTTAATTACCTTTCAGTGAGTCCCTTCAGAACACAGCACCTTATGAGGGTGTCAGTGGAGATGGGTGGGTAGATCGAACAATGCACGTTAGCGGAAGCAAATCATTgtggatttttaaaatgtttaaaaatattaacataaaatatgaatatgaaatgaGTAACATGCTTTGTTCTTACTGGTTTGAGGAATAGTACGTCTGTgtgtacagtactgtatgtgcatgagTGCAGGGGTTTGTCACTTAATGGATGCCCatgtaatgttttatttatttcactggGTTATTGCCAGTGATTGATGTTATAAAGTATTTGTAGTCAACATGATTTCCAGGATCTGACAATCACCTACACCAGTTTCCCTGGATCCTTGCATTCCTTGtcaattttcatttattgtataTACAATATTAGAAACCTACAAAATAGTTTGACCTGCTGAATTGAGATTAAAGATATAATAACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636997.1 lncRNA upstream 964 20626548 ~ 20628265 (+) True LOC120546929
XR_005636841.1 lncRNA upstream 269620 20261785 ~ 20359609 (+) False LOC120546242
TU251913 lncRNA downstream 54456 20693170 ~ 20702644 (+) True G186025
TU251924 lncRNA downstream 107603 20746317 ~ 20758806 (+) True G186035
XR_005636824.1 lncRNA downstream 350591 20989305 ~ 20991418 (+) True LOC120546176
TU252007 lncRNA downstream 381107 21019821 ~ 21023878 (+) True G186088
TU252015 lncRNA downstream 393927 21032641 ~ 21033182 (+) True G186094
XM_039782179.1 mRNA upstream 6598 20617250 ~ 20622631 (+) True LOC120546927
XM_039782178.1 mRNA upstream 6598 20617250 ~ 20622631 (+) False LOC120546927
XM_039782180.1 mRNA upstream 6598 20617474 ~ 20622631 (+) False LOC120546927
XM_039781449.1 mRNA upstream 636343 19982401 ~ 19992886 (+) False slc22a16
XM_039782910.1 mRNA downstream 239766 20878480 ~ 20881587 (+) True LOC120547338
XM_039782177.1 mRNA downstream 252694 20891408 ~ 20928761 (+) True mthfd1l
XM_039782175.1 mRNA downstream 265921 20904635 ~ 20928761 (+) False mthfd1l
XM_039782176.1 mRNA downstream 266789 20905503 ~ 20928761 (+) False mthfd1l
XM_039780932.1 mRNA downstream 298804 20937518 ~ 20980163 (+) True akap12b
TU251678 other upstream 769024 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 981073 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1089921 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 1306029 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 1347065 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2939664 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2939664 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 3440889 24079603 ~ 24083104 (+) True G186975

Expression Profile