RNA id: XM_039782230.1


Basic Information

Item Value
RNA id XM_039782230.1
length 4011
RNA type mRNA
GC content 0.47
exon number 16
gene id ppp2r5cb
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15142703 ~ 15173582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGTTTAGTGCCCTGAGTTGTCAAGGGTTTTGGTTGTGGAGTATCCGAGAGGGGAGCAAGGGCGGCTACGCTTGTACAATGCCGAATAAAACGAAAAAAGACAAGGAGTCATCTAAGTCTGGTAAAGTGGGCAAGAGTGGAGGACAAGAGAATTCAGAGCATGAGCAGAGCTCTAACAGGAAGGCTAGCAATAATGTTCCTCCCACCACTCAGCTGCTAAAGGGGAAGCAGCCAGGTTCCCAGACACCTGTCAGAAAGGACAAGAGGCAAAGCTCCTCCCGTTTCAGCTTGAGCAACAACAGGGAGCTGCAGAAACTGCCTGCATTCAAAGACGTTCCCCCTGCAGAGCAGGAGAAGCTGTTCATCCAGAAGTTGCGGCAGTGTTGCGTCCTCTTCGATTTCGTCTCCGACCCACTGAGTGACCTGAAATGGAAGGAGGTGAAACGGGCGGCGATAAGCGAGATGGTGGAGTACATCACCCACAACAGGAATGTCATCACCGAACCCATCTACCCAGAGGTGGTTCACATGTTTTCTGTGAATATGTTCAGGACGTTGCCGCCATCATCCAACCCCACGGGTGCCGAGTTTGACCCAGAGGAAGATGAGCCCACGCTGGAGGCTGCATGGCCACAtctacagCTTGTCTATGAATTCCTCCTACGGTTCTTAGAGTCACCTGACTTTCAACCAAACATAGCCAAAAAGTATATTGACCAGAAGTTTGTAATGCAGCTCTTAGACCTGTTTGACAGTGAAGACCCCAGGGAAAGAGATTTTTTAAAGACCACTCTTCATCGCATCTATGGCAAGTTCCTGGGCCTGCGAGCGTACATTAGGAAACACATTAATAACATATTTTATAGGTTCATTTATGAGACTGAACATCATAATGGAATAGCAGAATTACTGGAAATATTAGGCAGCATAATCAATGGGTTTGCATTACCGTTGAAAGAAGAGCACAAAATATTCCTGCTGAAAGTTCTGCTGCCTTTACACAAAGTCAAGTCTCTTAGTGTATATCACCCACAGCTGGCCTACTGTGTGGTACAGTTCTTAGAGAAGGATAGCACCCTCACAGAACCGACGGTAATGGCTTTGTTAAAGTATTGGCCGAAGACCCACAGTCCAAAAGAGGTGATGTTCCTGAATGAACTGGAGGAGATCCTGGACGTCATTGAGCCTTCAGAGTTTGTCAAAGTCATGGAGCCCCTCTTTAGACAGTTGGCCAAGTGTGTGTCCAGCCCACACTTTCAGGTGGCAGAACGAGCTCTGTACTACTGGAACAATGAGTACATCATGAGCCTAATCAGTGACAACGCCGCCAAAATCCTGCCCATCATGTTCCCATCCCTCTACCGCAACTCCAAGACCCACTGGAACAAGACAATCCATGGGTTGATCTACAATGCTCTGAAACTCTTCATGGAGATGAACCAgaagctgtttgatgactgcACCCAGCAGTTCAGGGCAGAGAAAAGCAAAGAGAAAGccaaatggaaagagagagaagatgcGTGGCTGAAGATTGAGAATCTTGCAAAGTCAAACCCACAGTTTCTGATATACGTGGACTCGATAGGCTCAGGTAGTCCGATGGACATGGAGACAGACGGGCCGCTGCTAGACGATGTCAACATGCTAAAGAAAGCTATGACGGAGGAAGCCACACAGGTCCTAAAAGAACAGCGTAGAGAGCGCCCATTGATGAGGAGGAAATCCGAGCTCCCCAGGGACATCTGCACTGTCACAGCCTTGGAGTTGCACCGGAGAGCCGAGGAAATGTTGACGACGCACGACGGCCACTAGGAGACCACCCAAGAGCCATCCTAAACCAGCAGCAGCATCCGCAGGGGAACCACAGGCCCACAGAGGCCAGCACAACAGCAGAACTCTGGTATCTCAGTCCAGCACAGCACAACACAGAACTGAACAGTCCCAGCTCCACCGGACGCAGGGAATGTCTAAAGCCACACGTCTAAGCCTTGTATGGCTTTTGTGGCCCCCACCCACCTTCAGCTTTTATCCACCTGGTTGTTGTCCTGGTCGCTGGACGGCAGACGCGACGGGAATGCACCATGGCCCCGAACTTCACCCAAGATACTGTCGTGGCGTTACCGCTTTTCCCTCCCTCGTTTTTCTCCTGTCCTCGCAACTCGTTGTCTTTTCGGGGTGCTGTGCTGCCCCCTTCTGGTCATTTCTCTCAGGTGTTCTGTTCTGTGCGTGAGCCGTCTTCTCTTCTCACCTCTTCTTTATAGATGTCAGGTGCTTGTACAAATAATATTAGCCTTTCGGtttgatttttaaaagaaaaaaacatcagtttATGAGAAAATGTCAGTTGTttctatatatttaatattagcTATTCTCATAACATTTAAACTAGACAgctgtttatattttatttttttcctacatAGTGtatattaggagctcttctcaGAGTAAAACACACTTCCTATCCGTATAACTGCTCTGTTTGGAGCccgctatttttttttctttcttcttttcattaGCTGTGATGATTCATTGATGGTTCTGGTAATCAGGACAGGGTCATCTGGGACTACCGGTAGAACGTTAAGGATTCAAAGCTACAACACAACTCTGTTCATCCAACGGGGCTGGCCGGACAGGGGTCCAGAGTGCGTCCAAGCCTAGTTTGGTGCCAACTTGTCTTCAATTTAGTTCCTTTCTTTTAATTGTGTCGGCAATAAGTTAACGCAGGTTTGCGGTGTGTGTCGGTGGCTCAGATAGTTTGTTGTTACGTGGTTGGATCCGTTCGATTGGTCCTTGGGATGAGTCCAGCCCGAGCCTGGTTTGCTTCGCCAGTTACATGAGAGGGGATTGTTGGATTTATTTTTGGTTGCCCGTTCGCATCCAGCCGTGGTCGGAGCGTGTTCAACAGCGCTCATTAGCATTCAGTACAAGTCGCTGTCATTCATGTGAGGCTTAcgagaggtcagagagatggagtTGCTCGTCTGGGATTTACACAATGCTGCTGTGTGTTGACAGAAGTCAaacgggggcagaaactgtgcTGATAGCGATCGCTTTTTCTACTCTTCTCAAGCAAGACccttttatttataaaacacGTGTTAGACTGCTCCATAGATGAGGTATGTTTGGTTCAAATAGGTCAAACATAAGCCTTTCTTTTCACAGTGCCTTTTATAGTCTAAAGGGATATTTGCTCAACCGAGAATTGTGTAGTAGCATGACCTAAAAAGCCAGATCATTGAAAAACAATTGTAACCTTAGTttccaaaaaaaacaccccccgACGCATTCAAGTCCGAACTTGGCACACCTCCAGCCGCTCGGATTCAAGCACATGCCTTGTTCAAGCTGCATAGTCGATTTTGTAATTAAAAGCTAAAGAGGAGAAGCAGAGTGGTCGCCCCAAGCCATTTCAGTGATGAAGCACTTCCTGATAAAACttgaaagaaaaatagaaacacaactgaaaaaaaacaaccaaactaTTAAAGAATTGAAATCCGTGATGCTGTCTGTCTTGGTGTGGGGCGGATAAGAGCTAGCCTCCACAGCAGAGGAAATCACCTCCGATTGTGACTTTTCCATTCTGCGCCCCCACTGTCCCACTCCACTTCTGATTTGTGCCATTGTTTGACCCCCTCTGCCCAGACCTGCACACTGactgtaacccccccccccccaagtaaAAACGCACTACCCTGTAGGGCTCGTTATTTGGACACCTGTTTGATCTGCTTCTGGATGCTTgcaagttcttttttttttgtcgtggTTTTATTCTTCCTTTGCCTGCAGAACCTCTTGTCAGTGTTTCAACTGAATGTGCAAATTGTAAATAATACTGcagtcatgttgttttttttctttctctttctctccatgttTGTCTTGAAGAACAACATTCACCAAAGGCTTTTTACCCAACCCGTATCCCCCTGTGCCCTGGGTATTCCAGTGGATTTGATCAAAGTGATTCCATCCCTTCAGTAATC

Function

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249709 lncRNA upstream 10932 15129476 ~ 15131771 (+) False hsp90aa1.1
TU249710 lncRNA upstream 31098 15110243 ~ 15111605 (+) False G184389
TU249711 lncRNA upstream 31098 15110243 ~ 15111605 (+) True G184389
TU249714 lncRNA upstream 32626 15109634 ~ 15110077 (+) True G184390
TU249638 lncRNA upstream 475116 14667226 ~ 14667587 (+) True G184345
TU249755 lncRNA downstream 108 15173690 ~ 15174130 (+) True G184419
TU249768 lncRNA downstream 28724 15202306 ~ 15202515 (+) True G184431
XR_005637012.1 lncRNA downstream 83551 15257133 ~ 15264717 (+) True LOC120547009
TU249801 lncRNA downstream 146436 15320018 ~ 15320239 (+) True G184461
TU249803 lncRNA downstream 148164 15321746 ~ 15322122 (+) True G184463
XM_039782224.1 mRNA upstream 1310 15135367 ~ 15141393 (+) True hsp90aa1.2
XM_039782225.1 mRNA upstream 7843 15130317 ~ 15134860 (+) True hsp90aa1.1
XM_039782494.1 mRNA upstream 25919 15113170 ~ 15116784 (+) True mgat2
XM_039781334.1 mRNA upstream 187787 14938918 ~ 14954916 (+) True LOC120546410
XM_039782857.1 mRNA upstream 440550 14699966 ~ 14702153 (+) True faua
XM_039782031.1 mRNA downstream 104003 15277585 ~ 15286851 (+) True slc25a29
XM_039782032.1 mRNA downstream 109964 15283546 ~ 15286851 (+) False slc25a29
XM_039780985.1 mRNA downstream 116092 15289674 ~ 15293252 (+) True LOC120546207
XM_039780969.1 mRNA downstream 122699 15296281 ~ 15300707 (+) True vrtn
XM_039780970.1 mRNA downstream 123034 15296616 ~ 15300707 (+) False vrtn
TU249525 other upstream 613333 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 761516 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 1021189 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1895287 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1992625 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 116092 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 128343 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 486991 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 521362 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 521362 15694944 ~ 15716284 (+) False dpf3

Expression Profile