RNA id: XM_039782306.1


Basic Information

Item Value
RNA id XM_039782306.1
length 2098
RNA type mRNA
GC content 0.45
exon number 6
gene id fndc4a
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18020956 ~ 18054926 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTATACTGCGCGTGCACTTGAGCTGAAACGCTAAGTGCTAGAAACCTTAGGGTCTCATATATAGACTACTTAGGGGGGGCTATACCAAAAAGGAATGCAGGAAAGACCAACCCCGCGTGCGTGAATAAACAGGAGTTGCGGAGCGCGAGGGCAGTCTGAAAACTTAGGCGCTGTCCACGGTGCTGAATCGCCACTCGGCGAGAGGACCGACGAGCCTGTGAGCGTCATCTTTTCTTCACGACCCGTTTCATACCTGAGCACTCCATGAAGACGGGGATGATGGACGTCTACAGTTTCAGACACCATATTTGAGTCGGACGCCAGGATGAAGGACTTGTGGATTTAAACCCCTGAATGAAGAATCCGCCTCGGCTCGACAAAATGTTTCTGAAGACATCATTTGTCACGTACTTTAACTGGCTATCTATTTACCGACCAACTCGAGTCCGATTCAGCCAGTAatcgttcattcattcattcatcaacATGATATAAGAATGAACTGATGCAATTGAGTTGCCCATCAGGCATAGGAGATCTGTGTTTTAATCTACTGTAAGAAGAGCAACCATACGCAACGAGACATGGCTCGCCTGCTTGTTTTGGTCAACTCCGTGGTCCTGTTGCTTTTTGGCAGTGACATGTTTTTGGTAGGAGCAAACCGGCCCCCAGCTCCCGTCAATGTGTCCGTCATGCACCTGCGGGCCGACTCTGCAACTGTATCCTGGGAGGTTCCAGAGGGAGATATAATAATTGGCTTCTCGATCTCGCAACAGAGACAGGAAGGACATATGCAGCGATTCATTCGGGAAGTCAACACCACCAGCCGCTCTTGTGTCCTTTGGGACCTAGAGGAGGAGACAGACTACATCATTCAGGTCCAGTCAATTGGCCTCTATGGGGAAAGCCAAGCCAGCAAGAAGGTCCATTTCCGCACCCTCAAGAAGACAGACCGCTTTCCCTCCAACAGCTCCAATCAAGATGACCCCACTGTGCAGGGCCTGGACAAGTCCCGGCATCTACAAACAGGAGAGATGATCATAATTGTGGTGGTCTTGCTCATGTGGGCAGCTGTTATTGCCCTGTTCTGCCGGCAGTATGACATCATCAAGGACAATGACTCCAGCAACAGTAAGGAGAAGGCCAAGCCGTCGTCAGAGAGGAGCACGCCGGAGCACCACAGTGGTGGGCTGCTGAGGAGCAAGTTCCATCCTTCTGTGCCGTCTATCAACATCATCGAAGTTTGAGAAGAAGGAATTCCTCTCTCTCTAATACGATCAATGCATTTCCACCTTTCTCACTGATGagttaaaaaaactgaaaacagtgAAGTTTCTGAGGGTCATCATCAGTGAATAAGGTTGGCTGAGGCTGTCTTTgctaaagacatgcatgcacacagtaTTTATAGAAAAACACTATAAACTACAAGTGCACACCAATTCACATGACCCTACAcaccccaatacacacacacacacacacacacacacacacacacacacacacacacacacacaatacagtagcTAACAGAACCTACTCCTGCAGGTTGATAGTACATAAACTAATGATAACCCATGGTGCAGTTAACATTGAAGACTTTGCCAGGTGCTTAGTACGTTATTgcaatacaaaacacacaatcaTCTCTGGGAGGCGGGGCTTCATGACTTTAAATACGCAGTGTATTTTTGATATTGGCATGTGCAATTAGACACCACATTCCCCTGTTATAGATAACTCAGCTCcaaataaatcaacattttCCCATTGCAAATAGTGTTAATAAATGATATTGTCTCATCACAAATGTATTGTGATGCAGATTGTTaataaggaaagaaagaaaatacatgTATTCATTTGTAAGAACCACCATGACGATGTCATAACGTTTTCTAGTAATATTAAAATACCATTTGCTGGtcaacattgtattttttcatGTCATAAATAACGAACATTATGTCTGTACATAGTGCATTCATTTACTAAAGTTGCATGCAGGTCATTTGCCTGTAGAATAGCATTTGATGTGCATTCAAAGTTAGATGCCAAAAATCAAGTAATAAATAATGATTGCAGTCCTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250777 lncRNA upstream 256171 17763969 ~ 17764792 (+) True G185156
TU250773 lncRNA upstream 257227 17760676 ~ 17763736 (+) False G185155
TU250930 lncRNA downstream 7982 18057411 ~ 18059367 (+) True G185254
TU250934 lncRNA downstream 53596 18103025 ~ 18104904 (+) True G185258
TU250935 lncRNA downstream 53596 18103025 ~ 18104517 (+) False G185258
TU250941 lncRNA downstream 89464 18138893 ~ 18140219 (+) False znf513a
TU250952 lncRNA downstream 106541 18155970 ~ 18158108 (+) False LOC120546825
XM_039782801.1 mRNA upstream 9012 18002070 ~ 18011951 (+) True blk
XM_039781950.1 mRNA upstream 26965 17976113 ~ 17993998 (+) False LOC120546768
XM_039781948.1 mRNA upstream 26965 17976119 ~ 17993998 (+) True LOC120546768
XM_039782812.1 mRNA upstream 65365 17952559 ~ 17955598 (+) True sox7
XM_039782196.1 mRNA upstream 71518 17920052 ~ 17949445 (+) True pinx1
XM_039782036.1 mRNA downstream 77702 18127131 ~ 18140260 (+) True znf513a
XM_039782037.1 mRNA downstream 77702 18127131 ~ 18140260 (+) False znf513a
XM_039782039.1 mRNA downstream 81260 18130689 ~ 18140260 (+) False znf513a
XM_039782044.1 mRNA downstream 123740 18173169 ~ 18177104 (+) True atraid
XM_039781474.1 mRNA downstream 145054 18194483 ~ 18198503 (+) True nme6
TU250889 other upstream 103715 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 334565 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 348077 17669172 ~ 17672886 (+) False G185145
TU250558 other upstream 654986 17341837 ~ 17365977 (+) False map7b
unassigned_transcript_1081 other downstream 882887 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1154725 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 1380166 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 1380166 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 1380167 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile