RNA id: XM_039782366.1


Basic Information

Item Value
RNA id XM_039782366.1
length 1580
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC120547018
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14329618 ~ 14335642 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGCTCGGCTAACAAGCTGACTGATTCACTTTAACTACACCACGGCCTGCAGCCTGCTCCTGTGTGCACCTGAGGACTAAAGACCAGAAAAGaaaaagCTGTACGTAATCTTCTTCTGGCAGGCAGCATGGATGCTAACAGCATTTGGCCGAGCCTGCCGCAGCCCGGAGCTGGTTTCCCTGCATGGCCAGGACAACCAGGACAGTCCACCCAGCCTGCACCGTGCTGGACTGGCCAGCCAAACACACCCTGCTGGCCTGGGACAACACCAGCTCCGGTATCTGTCCCTCAAGCCATGACACCAGCCCCTGCACCTAGCACAAACGTAGTTCAAGCTCCAGCTCAAGTTCCAGCTCCAGCTGCAGGGCAGCCCTGCCAGCCCTGCTGGCCAGGCACCCAGTACCAACCTTCCCAGTACCAACCTCCCCAGTACCAACCTTCCCAGTATCAGCCTCCTCAGTACCAGCCTCCTCAGTACCAGCCTCCGCAGTATCAGCCTCCCCAGCAACCAGCTCCAGTTCAAGCTCAAGTCCCTACTCAAATTCCAGCTCCAACTCCAGTTTCAGTCCCAGTCCCAGCACCTGCTCCTGCTACCAGCATCCGTCCAAATGTACCAGGATGGCCTGCCCACCCTGGCTGGCCCTATAACCCAGGACAGTCAGGATGGCCTGGGCAGAGTCCATCTGCCATGCCTCCACACTGGCTTCCACCCACATCTGGACCTCTTAGTGTGCCATACAACTTGAACCTGGCCCGAGGGATCTATGACAAGATGATGATGACCATCTTGGGCCATGTCAAACCCAATGCAAAAATGTTCACAGTGAACTTTCTGAGAGGCAACGACATCGCCTTTCACATCAACCCCCGCTTCAGTGAGGGGGGCAAACAGGCGTTGGTCCGTAACCACAAACTGGCTGAGCGCTGGGGACCAGAGGAGAGGGACCTGAATGGACCCTTCCCCTTCGCTCAAGGGAGCCCATTTGAGATGAAGATCCTGTGCACTCAAGAGACGTTCAGGGTGGCAGTGAACAACATCCCACTGTTTGAGTTCCGACACCGAATCAGAGAGCTCAACCAGATTGACAGAATCAACATCCTGCATGATGTCGTCCTCACCTGCGTCAATGTGGAGACACTTCCATAGGAAGCACACTATTACTCATGCAGTACATGAATCAATACATCGAGGACACAGACATGTATGAGCATGTTGTAAATGCACATGAGCAGAAATGCATACAAAGACAcatataaaaatgtatcagGAAGCTTCAAGATCGAACAAATGTGTTAATACGGGATGTCATATTAATTATGGCATGAGCTGAGCTCATTCTATATGCTACTTCCTCTACCACATAGCTAACATTTAATACATATACAAACATTCCTATTCTCTATGCAGATGCTACTGTATTTGTTGTATACAATAGTTTCTATATTATTAAATTGCTACTAACTGAGAATTATAGATGTGTTAATAttgccataaaaaaaacaatactgtcTATTAGATATCCATTAGGGTTCTGTTAACTGTACTAATtcttaaataaaactatcagtCAAAAATCTG

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637034.1 lncRNA upstream 340962 13952385 ~ 13988656 (+) True LOC120547176
XR_005637035.1 lncRNA upstream 340962 13956925 ~ 13988656 (+) False LOC120547176
TU249355 lncRNA upstream 438702 13889301 ~ 13890916 (+) True G184128
TU249294 lncRNA upstream 855485 13468423 ~ 13474133 (+) False LOC120546706
TU249297 lncRNA upstream 868712 13458602 ~ 13460906 (+) False G184085
TU249492 lncRNA downstream 34482 14370124 ~ 14370768 (+) True G184235
TU249501 lncRNA downstream 86685 14422327 ~ 14424853 (+) False LOC120546619
TU249514 lncRNA downstream 140982 14476624 ~ 14565127 (+) True G184249
TU249531 lncRNA downstream 222900 14558542 ~ 14606665 (+) True G184263
TU249632 lncRNA downstream 319992 14655634 ~ 14656247 (+) True G184339
XM_039781440.1 mRNA upstream 89020 14235279 ~ 14240598 (+) True lamp5
XM_039781439.1 mRNA upstream 94627 14232278 ~ 14234991 (+) True LOC120546497
XM_039781330.1 mRNA upstream 100391 14144585 ~ 14229227 (+) True LOC120546405
XM_039781907.1 mRNA upstream 188849 14024485 ~ 14140769 (+) True LOC120546742
XM_039781682.1 mRNA downstream 57798 14393440 ~ 14424864 (+) True LOC120546619
XM_039781684.1 mRNA downstream 59456 14395098 ~ 14424864 (+) False LOC120546619
XM_039781683.1 mRNA downstream 73289 14408931 ~ 14424864 (+) False LOC120546619
XM_039781681.1 mRNA downstream 73301 14408943 ~ 14424864 (+) False LOC120546619
XM_039781687.1 mRNA downstream 91922 14427564 ~ 14439516 (+) False LOC120546620
XR_005636930.1 other upstream 208104 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1082202 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1179540 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 1321207 12990676 ~ 13008411 (+) True LOC120546167
XR_005637057.1 other upstream 3598836 10730505 ~ 10730782 (+) True LOC120547354
TU249487 other downstream 26699 14362341 ~ 14381187 (+) True G184231
TU249525 other downstream 189494 14525136 ~ 14529370 (+) True G184258
XR_005636833.1 other downstream 954032 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 966283 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 1324931 15660573 ~ 15663574 (+) True rhov

Expression Profile