RNA id: XM_039782456.1


Basic Information

Item Value
RNA id XM_039782456.1
length 3113
RNA type mRNA
GC content 0.50
exon number 20
gene id eya4
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17709799 ~ 17758414 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTCAATAATGAAGTTGAGTCTAATGTCTCTGTACAGCCTGGTGCTCAAACTTGGACTCGGACTGAAAATAATGGTGTTTCCCGCAGAGGTGAGCCGTCCGGTCACCGAACCCGAGATCCGGGACTCCGGTTTGAGTTTGTAAAGTTGTTAAATCGAGTCTAATTAACTTATCGGGCTTGTTTTTGGACTCTTGCGGGTAATGGCCAGCAGTGGCTGAAGTGTTTTGATCCAGTCAGTGACAGCCTGCAAACAGCAGGGAGAGCTGTGCGGCGACCACACTGCATTAGATTATGAGCAGATCTCAGAAGTGAAGGAAATCTGGGAGCTGGTTTCTTGCTGGGACGAAAGTAATTTAAACACAGTGTGTGACGGATAACAACCCAAGAAGCCATGGAGGCCTCACAGGACCTCAACGAACAGATGGTAAAGAAATCACATAGTGAATCTCATGTTCCAGACCCTTCAGACACCAGGTCTATGGAAATGCAGGACCTAGCCAGTCCTCATAACCGTGTGGGTGGTGGAGATTCGACAGGCTCCAAGCTGGACAAGAACAACCTTGGCAGCCCCTCGGTCACCACCAATGGAACAGGAGGTGAAAACATGACAGTTCTAAACACGGCTGATTGGCtgttgggctgcagcagcccgCCCCCTGCCCCGGGCTCCAAGGACTATGTGAAAACAGAGCCTATGAACAACAGCGATACAGTCACTACGACAGGCGACACAGCACTGGACACATACGCAGgctcagTAATCACCAGCAGCGGGTACAGCCCTCGTTCAGCCCACCAGTACTCCCCTCCCCTCTACCCATCCAAgCCCTACCCTCACATTCTCTCCACACCGGCAGCCCCTCCCATGCCGACGTACGCCGGTCAACCCCAGTTCAGCAGCATGCAGCAGTCGGCCGTATACACCGCTTACTCCCAGGCAGGACAGGCATACGGACTGTCCTCCTATGACCTCGGTGTGATGCTGCCAGGCATTAAGACAGAGAGCGGCCTGGCTCAGAGTCAGTCTCCTCTGCAGACAGGCCTCAGCTACAGCCCCGGCTTCACCACACCTCAGCCCGGACAGACTGCATACTCACCCTATCAGATGCCAGGTTCCAGTTTCACTCCTTCCTCAGGCCTCTATGCCACCAACAACTCAGTGTCCAACCTCGCCAACTACACTGCCACACAGCAGGATTATCCCTCATATACGACGTTTGGCCAAAACCAGTATGCCCAGTATTATTCCGCCTCCGCTTACGGGACTTATATGACCTCCAACAGCGTAGATGGCACAGGCTCAACGGCAGCCTACCAGCTGCAAGATCCTGCCCCTGCCATGACCGGACAGGCTGCTGAACTTCACCCAGGGGACTTTGATACAGTGCAGAGCCCCTCCACGCCCATCAAAGAGCTGGATGACCGAGCCTGCCGGAGTGGGGGGTCCAAGTCCCGGGGCAGGGGCCGTAAGAAcaacccctcccctccccctgaTAGTGACCTGGAGAGGGTGTTTGTGTGGGATCTGGACGAGACAATCATCGTCTTCCACTCTCTGCTCACAGGCTCCTACGCACAGAAATATGGCAAGGACCCTCCCATGGCGGTAACGCTGGGTCTGAGGATGGAAGAGATGATCTTCAACTTGGCTGACACACACTTATTCTTTAATGACCTGGAGGAGTGTGATCAGGTACATATTGATGATGTGTCATCAGATGACAATGGCCAGGACTTAAGTACTTACAGTTTTGCAACTGATGGCTTCCATGCAGCTGCAACCAGCGCCAACCTGTGCCTGGCTACGGGGGTCCGCGGTGGGGTCGACTGGATGAGGAAACTGGCCTTCCGCTACCGACGAGTCAAAGAGTTGTATAGCACGTACAAAAACAATGTGGGGGGTCTGCTGGGTCCTGCTAAAAGAGACGCCTGGCTGCAGCTCAGAGCAGAGGTGGAGGCTCTGACTGACTCCTGGCTCACCCACGCACTCAAGTCCCTGTCCATCATCAGCTCCAGGAGTAACTGTGTAAACGTGTTGGTGACCACAACGCAGCTCATACCAGCGCTGGCTAAAGTTCTCTTATATagtctgggatctgttttcccCATTGAGAACATTTACAGTGCAACAAAAATAGGCAAAGAGAGCTGTTTTGAGCGTATAGTCTCCCGCTTTGGCACTAACATTACATATGTTGTGATTGGCGATGGGAAGGATGAAGAGCATGCAGCCAGCCAGCACAACATGCCTTTCTGGAGGATATCCAGTCACTCTGACCTGCTGGCACTACACCAAGCACTGGAGTTTGAGTACCTGTAACTATTATAGCAATATGGACTCATGCAATGTTACCGTGGACATGGTCAGCCAGGCAGCCCCCTTCTTTTGTATAACTATTTAAGAACAAACAATACACTgcaattgtttttgtgatttttcctttttgtcttgtctttttgAACGTCTGGATTTACAAACTCTGAACGGTCTTAAGAAGCAAAGGAGAGGTGAAAGGAGGTATAGAAAATCAGAGGTGACTCAACTACCCAGCTACCCCAATACTGGGAACGGACCGCTGTGAAAAACTCCTGTCTACTGTCCTTGCAGCTGTAGCAGACTAAAACCCTGGAAAGGCTTAAGACCTCCCTTGGCCTGGGAGGAGGTTTTTTTTGGGAAACTCCTTGATGTTTGGTTTGCTCTGGGGCAACCAGCCCAGACTAGTATCAGTCCTGTTGTGGGTCACCTGGGACAAACTATCTTCAAACAACGAGGGCTTCTCTGTACAGGCAATGTGTGTGCGGGGATAacgaatgtttttttttttttaagtgttttcttCCTGCTGGTATAATCACAACACAATGCAGACTGCATCAGAAACTTGTGTAAATTATTTACAATAAACTTAAAGGGCAGTGGTGGATGTTTTTGTCAAGGAAAAGACTTTTTGgggtcttttgttttttttctctggatttttgtaattgtttggGCGGGGAGAACTGAGGATGTGCGTCATGATGTGTTGTGCCTTAATGTGTTTGAATGTCTTTTCTTTATTCAGAAATGTCTATGTATGTAGATATAAAGGAGAAAACTTATCCAAATGA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250765 lncRNA upstream 16165 17676725 ~ 17693634 (+) False LOC120546940
TU250762 lncRNA upstream 21519 17686942 ~ 17688280 (+) True LOC120546941
XR_005637002.1 lncRNA upstream 22335 17686696 ~ 17687464 (+) False LOC120546941
TU250756 lncRNA upstream 23401 17680465 ~ 17686398 (+) False G185145
XR_005637003.1 lncRNA upstream 38322 17669166 ~ 17671477 (+) True LOC120546942
TU250773 lncRNA downstream 2262 17760676 ~ 17763736 (+) False G185155
TU250774 lncRNA downstream 2262 17760676 ~ 17763736 (+) True G185155
TU250775 lncRNA downstream 2262 17760676 ~ 17763736 (+) False G185155
TU250776 lncRNA downstream 2262 17760676 ~ 17763736 (+) False G185155
TU250777 lncRNA downstream 5555 17763969 ~ 17764792 (+) True G185156
XM_039781339.1 mRNA upstream 23300 17671513 ~ 17686499 (+) True LOC120546414
XM_039782210.1 mRNA upstream 32763 17674393 ~ 17677036 (+) True LOC120546940
XM_039781107.1 mRNA upstream 55438 17652502 ~ 17654361 (+) True tcf21
XM_039782079.1 mRNA upstream 86687 17615329 ~ 17623112 (+) True slc2a12
XM_039782788.1 mRNA downstream 33439 17791853 ~ 17799948 (+) True lca5
XM_039782779.1 mRNA downstream 33439 17791853 ~ 17799948 (+) False lca5
XM_039782777.1 mRNA downstream 33439 17791853 ~ 17799948 (+) False lca5
XM_039782780.1 mRNA downstream 33439 17791853 ~ 17799948 (+) False lca5
XM_039782783.1 mRNA downstream 33439 17791853 ~ 17799948 (+) False lca5
TU250755 other upstream 23401 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 36913 17669172 ~ 17672886 (+) False G185145
TU250558 other upstream 343822 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 343822 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 414098 17293654 ~ 17295701 (+) True G184996
TU250889 other downstream 158439 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 262549 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 262549 18020963 ~ 18052071 (+) False fndc4a
unassigned_transcript_1081 other downstream 1173902 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1445740 19204154 ~ 19208096 (+) False LOC120546624

Expression Profile