RNA id: XM_039782494.1


Basic Information

Item Value
RNA id XM_039782494.1
length 2022
RNA type mRNA
GC content 0.50
exon number 2
gene id mgat2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15113170 ~ 15116784 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCCCCCGCTGGACCAGTGCATTGTGGGACAGCGGCAGCAAGGCAGGCAGTGGTTCCGTATTTGGGATTTTTACAGCTAGCTGATAGTTACGTTTCCATGCAACCTGCATGAAGGTATGGAGGAACATGGGACGCCACCGTACTGATGTGTATCACTGAAAAGGACGGCACGGCTACTCCAGTTTTAACGCTAGgtGGTTCATGCGCACTGCTACCCTGCTGCCTCCTAGCAACCGTCATGCCTTATGGAATATTCATCCACCACCAATGACATTCCAGTGGGACCCATGTTTACAACAACAGTTCATTTTGCCAACAATTAGCCTCATATCAGCTTCTTTTTAATCAGGCTTGCTCCGTTTGCAAAGCACACCATCACAATTGCAAAcctgtgctttttttgtttttgtttcactgCAATCAACTTCTCTCCGTTCGCAAGAGCTTGACCCCCTATCATGAGATTCCGAATCTACAAGAGGAAGGTGGTGATACTGACTGTGGTGGTTGTCATCTGTGGCCTGGCTTTCTGGAGCAGCGGAAGGCAGAAGAAGAACGACAGTGGATCGCTCCCCAAGGAAGCGGAGACGGTGAAGAGAagcagcagcattagcagcagcagtagtagcatcAACAATCATATCCAGGTGCAAGCCACACCTGCAGTCAGCAGGGCACCTGCCCCACCCCCTGTTATACAAGCCAATGACACACACCAGGAGAAAGcaaaggaaaaagagaagatACCCAAGCCACCACAGCCAGAGGCAGATAACACCACTTTAGTCTACCGCGGCATTGTCTTCCAGCTCAACTTCGACCAGACAATAAGAAATGAGGAAAAGTTTAAGGCAGCGCAACAGAAGGACCATCTGGTTGTGGTGGTTCAGGTCCATAACCGACCAGAGTACCTTAAGCTATTGGTGGACAGTTTGCGGAAGGCCAGAGGTGTGGAGAGCATACTGCTGATATTCAGCCATGATTACTGGTCCCCTGAGATAAATAAAGTGGTGGCCTCTGTTGACTTTTGTCAGGTACTTCAGATTTTCTTCCCCTTCAGCATCCAGCTGTACCCCGAGGAGTTCCCCGGACACGACCCCAGAGATTGTCCCAGAGACATTCCCAAAAAAGACGCCTTAAAGCTGGGTTGCATCAACGCAGAGTACCCTGACTCATTCGGCCACTACCGTGAGGCAAAGTTCTCCCAGACCAAGCACCACTGGTGGTGGAAGCTGCACTTTGTATGGGACAGGGTCCGGGTTCTGAAGGAACATACGGGTGTGGTCCTGCTGATCGAGGAGGACCACTACTTGTCCCCGGACTTTATCCATCTGTTGAAGCTGATGTCCGCTCTCAAAAAGGAGCGGTGCAATGACTGCGACATCCTCTCGCTGGGGAGCTACAGCCACATCGGCTACTCCAGCAAAGCCAATAAGGTGGAGGTGAAGCCCTGGAAGTCCACTGAGCACAACATGGGGATGGCTCTGAGTAGAGAGACGTACCAGAAGCTCATCAAATGCACCGACACGTTCTGCACTTACGACGACTACAACTGGGACTGGTCCTTACAACACCTGACCGTGTCCTGCTTGCCCTCCTACTGGAAGGTCATGGTGAGTGAGGCGCCACGGATTTTCCACGCCGGAGACTGTGGCATGCACCACAAGAAGACTTCTTGCATGCCGATAAGCCAGAAAACCAAGATAGAAAACATCCTACAAAGCAGCGGGAACCAGCTGTTCCCAAAGAACCTCCTGATAGCAAAGAGACTGCCGGCCAACGGGGCCGGAGGGGTGGCACCACATGTGAAAAACGGGGGCTGGGGAGATATCAGGGACCATGAACTCTGCAAGAGTTATGTTCGATTACAGTGACCTTAATTGCTACTATTATATATTATCGTCTCTTTTTGCATCctctataaagaaaaaaaaagccttttgaaAGTAAATCTTTATGGACTATTCTTCTTATTGCCTGTTTTATCGGACTGTTCCAAATAAAGACAAATGTTGAATTTT

Function

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249710 lncRNA upstream 1565 15110243 ~ 15111605 (+) False G184389
TU249711 lncRNA upstream 1565 15110243 ~ 15111605 (+) True G184389
TU249714 lncRNA upstream 3093 15109634 ~ 15110077 (+) True G184390
TU249638 lncRNA upstream 445583 14667226 ~ 14667587 (+) True G184345
TU249636 lncRNA upstream 450689 14662094 ~ 14662481 (+) True G184343
TU249709 lncRNA downstream 12692 15129476 ~ 15131771 (+) False hsp90aa1.1
TU249755 lncRNA downstream 56906 15173690 ~ 15174130 (+) True G184419
TU249768 lncRNA downstream 85522 15202306 ~ 15202515 (+) True G184431
XR_005637012.1 lncRNA downstream 140349 15257133 ~ 15264717 (+) True LOC120547009
TU249801 lncRNA downstream 203234 15320018 ~ 15320239 (+) True G184461
XM_039781334.1 mRNA upstream 158254 14938918 ~ 14954916 (+) True LOC120546410
XM_039782857.1 mRNA upstream 411017 14699966 ~ 14702153 (+) True faua
XM_039782853.1 mRNA upstream 413677 14682241 ~ 14699493 (+) False prpf39
XM_039782852.1 mRNA upstream 413677 14682242 ~ 14699493 (+) True prpf39
XM_039780903.1 mRNA upstream 478710 14630105 ~ 14634460 (+) False LOC120546154
XM_039782225.1 mRNA downstream 13533 15130317 ~ 15134860 (+) True hsp90aa1.1
XM_039782224.1 mRNA downstream 18583 15135367 ~ 15141393 (+) True hsp90aa1.2
XM_039782230.1 mRNA downstream 25919 15142703 ~ 15173582 (+) True ppp2r5cb
XM_039782231.1 mRNA downstream 25919 15142703 ~ 15173582 (+) False ppp2r5cb
XM_039782232.1 mRNA downstream 35616 15152400 ~ 15173582 (+) False ppp2r5cb
TU249525 other upstream 583800 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 731983 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 991656 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1865754 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1963092 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 172890 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 185141 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 543789 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 578160 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 578160 15694944 ~ 15716284 (+) False dpf3

Expression Profile