RNA id: XM_039782503.1


Basic Information

Item Value
RNA id XM_039782503.1
length 468
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC120547093
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13989481 ~ 13990079 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGTTTACATGTAaaggtgtgtgttttgagtgcaagtactgtatatgcacatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttctttcaGGTTTCCTGGACTCTGAGCCATTGAGAGAGGCTGATGAAGATATGGCCTCAGAAGTCAACCTAAACAACTCCATCATGacggaggaggagagagaggagattcAGCAAGAGTTAGCTAAActggaggaggagatcAGTACGTTGAAGCAGGTTTTGTCGTCCAAAGAGAAGCAGCACGCAGACCTCAAACAGAAGCTGGGCGCGACTTCTCTGTACGAGCTCAGGAACAACCTCAGTAGAGGCTGGCACGACATGCAGACCTCCACGGCGTAagttaatgtgtgtatgtgagtgtgtgagacagCTGAAAGAGTTTGCAGGTTGAAGTGTTAGAGTGAAGgggagaaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637034.1 lncRNA upstream 825 13952385 ~ 13988656 (+) True LOC120547176
XR_005637035.1 lncRNA upstream 825 13956925 ~ 13988656 (+) False LOC120547176
TU249355 lncRNA upstream 98565 13889301 ~ 13890916 (+) True G184128
TU249294 lncRNA upstream 515348 13468423 ~ 13474133 (+) False LOC120546706
TU249296 lncRNA upstream 521394 13458602 ~ 13468087 (+) True G184085
TU249492 lncRNA downstream 380045 14370124 ~ 14370768 (+) True G184235
TU249501 lncRNA downstream 432248 14422327 ~ 14424853 (+) False LOC120546619
TU249514 lncRNA downstream 486545 14476624 ~ 14565127 (+) True G184249
TU249531 lncRNA downstream 568463 14558542 ~ 14606665 (+) True G184263
TU249632 lncRNA downstream 665555 14655634 ~ 14656247 (+) True G184339
XM_039782333.1 mRNA upstream 50922 13933833 ~ 13938559 (+) True chgb
XM_039781329.1 mRNA upstream 113846 13870887 ~ 13875635 (+) True gzf1
XM_039780953.1 mRNA upstream 412065 13502644 ~ 13577416 (+) True atad2b
XM_039781816.1 mRNA upstream 515322 13468235 ~ 13474159 (+) False LOC120546706
XM_039781909.1 mRNA downstream 34405 14024484 ~ 14139891 (+) False LOC120546742
XM_039781907.1 mRNA downstream 34406 14024485 ~ 14140769 (+) True LOC120546742
XM_039781908.1 mRNA downstream 34406 14024485 ~ 14140769 (+) False LOC120546742
XM_039781330.1 mRNA downstream 154506 14144585 ~ 14229227 (+) True LOC120546405
XM_039781439.1 mRNA downstream 242199 14232278 ~ 14234991 (+) True LOC120546497
TU249175 other upstream 742065 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 839403 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 981070 12990676 ~ 13008411 (+) True LOC120546167
XR_005637057.1 other upstream 3258699 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 3323009 10622736 ~ 10666472 (+) True G183540
XR_005636930.1 other downstream 34405 14024484 ~ 14121514 (+) False LOC120546742
TU249487 other downstream 372262 14362341 ~ 14381187 (+) True G184231
TU249525 other downstream 535057 14525136 ~ 14529370 (+) True G184258
XR_005636833.1 other downstream 1299595 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 1311846 15301925 ~ 15318836 (+) True G184458

Expression Profile