RNA id: XM_039782619.1


Basic Information

Item Value
RNA id XM_039782619.1
length 2159
RNA type mRNA
GC content 0.44
exon number 10
gene id stx7l
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15730047 ~ 15738980 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTATTGTCACAATATTCgttttcagtgttttctgttgttgttgctataTAGCCGTTCCTTTGTCATAAAGTCATTTCTACCAGTGATTTTTGCCTCCATTGCTCCAGACATCATGTGACGGGGGAGGGGCAGAGAATCAGGaaacacactgctgctgctgctgctgctgcaagtCACAAGAAAGCTCTCCATCATGGCCTACCAGGCTGGGTCTCCAGAGGAGCCCAGTGCTTTGGTTCACAATATCAGTTCCAACATCCAGAAGCTGACGCTGCtgaCCTCGGAGCTGCAGAGGGCAGTTTCTCTGCTTGGAACAGAGCAAGACAGCAGCCAGCTACGACAGACGCTgcaacagaaacaacaGCAAGGCAACCAGCTAGCGAAGGAGACTGACAGACTGATCAAGGCATTCAGTGCACTTCCTGTTGGCCCAGATCAGCGGCAGAGGAAGATACAAAAAGAGCGTCTGGTGAATGACTTCTCCGCTGCCCTGAACAGCTTCCAGAAGACCCAGCGGCAGGCGGCCAACcaagagagagagtttgtggcCAGAGTCCGAGCCAGCTCCAGGGTTTCGGGAGGACACCCTGATGACAGCTTTGGAAATGTGCCTAATTTCCTTGGTGATTCTCAGGTGCAGGCTCAGACTGAGGCCATCACTGAAGAAGACTTGAGGCTGATCCAGGAGAGAGAGTCGTCCATCAGGCAGTTGGAGTCGGACATCACCGATATCAATGACATCTTCAAGGACCTGGGGATGATGGTCCATGAGCAGGGAGACATGATAGACAGTATAGAAGCCAATGTGGAGAATGCAGATGTGAATGTCCAGAGCGCCACACAGCAGCTGGCACGTGCTGCAGACTATCAGCGGAGCTCCCGGAAGAAGATATGCATCCTGATGATATTGTTGGCTGTAGTTGCTGTTGTTATTGGACTTATCATCTGGGGCGCAGTCAAAAAATGagggcttcttcttcttcccctcCTCCACCTCTCCGGTTTAGTCATCAGCCTGGACAAAGGATTGAGCACCGTCCTtcctctcctcatcctcctccttttctccccCCCCATGGGACTGtcaatgggagtcaatgggactgtctgtctttctttgacttgatttatattttaaagatgTTGCATTCCTCATTGACAGGAAAACACACTCCTTCACTGTGAAAACAAAACGAGCGCTGGTTGCTTTATTGTTATAATCAGCTTTAattgaattcttttttttatttaggcatGATTGTCCTGTAACACAGGACAGGTGCAGCCATGTTAGCTACCCCTCTACCGAACGTTCAATAAGATACAATACAGACAATGCTTCTGGGTGCAATGAAGCAGCAAGTTGCTGTAGGCAGGTAAGAGGGAATTAACCTTCAGATCAGTTATATTGCTGCAGCTGCTTTCTTTTATCAGGTCAGATATGAACAATTAAAACCATGTATCAAGTGCACTCTGTAAATTTGGGAGTAAAGTCAGCCTTGGTCCATAGCACAATAAAGCCAAACTGCATTCAGCTTATTGCAATGCATTATTTCCTGtatttaaaattgtaattaattaaaatgactAGCTAATTTCTATTCAAATTGATGTAGTTGTAATTTTTTGATAGATCCATACTAAATCTTGTGATTTGGACCTTATATTACACTCCACTGTCAGCCAGCTATTCCAAGtaagtttctttttcttttgtaaatgCAACACATAATCGTTTGAGTTGTGTTTTATGGTTTGTTTAACTGTACTTCGGTATGCTTCTTTTAAAGAAACCACACAGGTGTCTTCAATTTTCTGGCTGATTAGAGCTCGTTACACGTTGCAGGTGGGCCAGAGCTGCGTCAATCAGTCGTGGTCTAGTCAGCCAGTCTAAGtggaaacacctgtgtgggggCTTTACTCATAGGAAAGTACCGACAGTCAATTATCATTATTTCTCTGTGATTGACAACCCACAGTAACCGTCGTTTTTCCTGATATGAAGAAACCACAACCCAAAGTAAATAAATTGAAACCAAACACTACAAACTATTTGCTACTACTATTtgacatatgtaaaattatgaTCACATGTATATTTTCAATATTGAGATTTGGCTGCCTaccatatataaataaattaccTGACTGTACTGAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08488 STX7; syntaxin 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249854 lncRNA upstream 49888 15678997 ~ 15680159 (+) True G184508
TU249855 lncRNA upstream 74527 15654846 ~ 15655520 (+) True G184509
TU249823 lncRNA upstream 236520 15493204 ~ 15493527 (+) True G184481
TU249814 lncRNA upstream 250967 15478491 ~ 15479080 (+) True G184474
TU249805 lncRNA upstream 407159 15322575 ~ 15322888 (+) True G184465
TU249871 lncRNA downstream 38249 15777229 ~ 15780546 (+) True G184521
TU249880 lncRNA downstream 58835 15797815 ~ 15798794 (+) True G184526
TU249922 lncRNA downstream 150385 15889365 ~ 15889585 (+) True G184561
XR_005636843.1 lncRNA downstream 175606 15914586 ~ 15920914 (+) False LOC120546249
TU249891 lncRNA downstream 175665 15914645 ~ 15921798 (+) True LOC120546249
XM_039781224.1 mRNA upstream 10415 15694944 ~ 15719632 (+) True dpf3
XM_039781225.1 mRNA upstream 10415 15694944 ~ 15719632 (+) False dpf3
XM_039781226.1 mRNA upstream 10415 15703036 ~ 15719632 (+) False dpf3
XM_039781221.1 mRNA upstream 42320 15680461 ~ 15687727 (+) True zfyve1
XM_039782916.1 mRNA upstream 66386 15660670 ~ 15663661 (+) False rhov
XM_039781271.1 mRNA downstream 33680 15772660 ~ 15776217 (+) True ccn2a
XM_039781050.1 mRNA downstream 114830 15853810 ~ 15877749 (+) True tmem200a
XM_039781069.1 mRNA downstream 247103 15986083 ~ 16014859 (+) True itpkb
XM_039781070.1 mRNA downstream 247103 15986083 ~ 16014859 (+) False itpkb
XM_039781072.1 mRNA downstream 277995 16016975 ~ 16042239 (+) True coq8aa
XR_005636865.1 other upstream 13763 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 13763 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 66473 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 411211 15301925 ~ 15318836 (+) True G184458
XR_005636833.1 other upstream 436795 15289674 ~ 15293252 (+) False LOC120546207
TU249895 other downstream 175665 15914645 ~ 15968123 (+) False LOC120546249
TU250012 other downstream 660458 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 1026565 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 1086714 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 1554674 17293654 ~ 17295701 (+) True G184996

Expression Profile