RNA id: XM_039782672.1


Basic Information

Item Value
RNA id XM_039782672.1
length 2361
RNA type mRNA
GC content 0.46
exon number 13
gene id pgm3
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16518444 ~ 16523666 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTCGTCAGTGGGAAGCATACGGAAGCATATTATCAAAGAATTTCCGGCTTTGATATTTTATAAGGTGGGAAGAAGAAACCAGGAAGCGTTTCATGACAACACTTCACTTCTAAACATCCAGAAAACAAACCATTATGTCCCAGTTTAAGGAAGTATCAAAGCAGTCTAGTCTGCACCCCAAACCGGCAGGGTTGGTTTTGCAGTATGGTACCGCTGGTTTCAGGACCAATGCCAAAAAGCTGGACCACCTCATGTTTAGGATGGGACTGCTGGCCACTCTCCGCTCCAAAAAGACCAAAGCCACCATTGGAGTCATGGTCACCGCATCACACAACCCTGAGGAGGACAACGGGTTGAAGCTGGTTGACCCCATGGGAGAGATGGTGACGCCGACATGGGAGGTCTACGCCACCCAGCTGGCCAATGCTGAGCAGGAAGATTTGCTCGCTGCTCTGCAGGACATTATAGAGAAGGAGGCCATAAACATGAGCCAGGAAGCTAATGTGTTTGTGGGCAAAGACACCAGGAGCAGCAGTGCCAGCCTTTCACAGGCAGTACTGGATGGAGTATCTGCACTCGGTGGTCACAGCAAAGACTATGGTTTGGTGACCACCCCACAGCTCCACTACATGGTTTGCTGTCAGAACACACAGTGTAAATACGGAGAAGCCACAGTGGAAGGATACTATAAGAAACTCTGCCAAGCTTTCATTCAGCTCACGAAAAATGCATCCAATTGTACAGACGACCAGAAGCACCTCACTGTGGACGGCGCTAATGGTATAGGGGCCCTAAAGTTGCGTGAGATGGAGAGTCACCTGAAGGGGGAGCTGCATATATCGCTGTTCAACGATGGCAGTAAAGGAAAGCTCAACCACCAGTGTGGGGCTGACTTTGTCAAAGTGCAGCAAAAACCTCCAACAGGCATTAAGATGAACCCAGGAGAGCGTTGCTGTTCCTTTGATGGTGATGCTGACCGAATAGTTTACCACTACGCTGACTCCGAAGGACAATTTCACCTGCTGGATGGAGACAAAATTGCTACTCTCATCAGCATTTTCCTTAAAGAGCTGCTCGCACAGGCTGGTCTGGACTTGGAGATAGCAGTGGTGCAAACTGCTTATGCTAATGGAAGCTCAACAAACTATTTGGAAGACACATTGAAGGTGATAGTGAGGTGTTCTAAAACTGGAGTGAAGCACCTTCATCACGCAGCCCAGGAGTTTGATATTGGTGTGTACTTCGAGTCCAATGGTCATGGAACTGTGTTGTTCAGTAAAGCAGCTGAAGAGAAGATCCAGCAGCTAGCTGAGAACTCCACCATCAATGACGAGAGGAAGAGAGCAGCTCTCCTGCTGCAGAACACTGTCAACGTCATCaaccagACTGTAGGTGATGCCATTTCTGACATGCTGCTGATCGAAGCCATATTAGCCATCAAGGGTATGACTATCCAGCAGTGGGACGCCCTCTACAGTGACCTGCCAAACAGGCAGCTCAAAGTCAAGGTGTCGGACCGCAGGATGATAGACACCACAGACGCAGAGAGACGGGCAGTGAGCCCAGCAGGACTGCAGGAGGCCATCAACACTTTAGTGAAGAATTACAGAGAGGCTCGCTCCTTTGTGAGACCCTCCGGCACCGAGGATCTGGTGAGAGTTTACGCCGAGGCAGAAACACAGgaGAGTGCTGATGCCCTGGCACATGACGTCAGTCTTGTGGTTTATCGTCTCGCTGGGGGAGTGGGGGGTGAACCCAAACCATTGCActagaaacacatacacacacaatcatacaaCATCGACTAATCATTAGGTGCTTTTTGAATGCAATTTCAGTTGACAGCATCTTTCTCTAAAGTTGTATTTTGTCAAAATTGCTTCATTTCAGTGAGGTGCCAAATTATTTTGTACTGTTAATTGCACTCTAGTTCTCTATTTCTTTGTATTTGTCATCATTGTGAATATATGGGATGCACTGGGGGGGGGCAATGAATGGACTTTATGCTACTTTACTCATGGCCAGTTATTATATCTCTATCAGGCTGCCAAAATTAATGGGTTAATTAATGTAAATTATGAGTTTCTGTGTAATATAAACTTGATACATAAACTGTATATATGCCATAATTAAAACATCAATTGTATTCTCACACAAATTAAGAAGGTTTTCAATTAACTTTCAGTTATCTTGTATCTTCCTACTAAATGGAATCTTTTTGACCGGTTACTGTAGGTAATTTCTTTGCTTTATGAGTGACATCCCAAGTTTACATGAGGGGTGTTGTAATAATTGTTCTTCCCTTGAATGTCCGTTGGAAAGCCTTTGCTGCTTTGGTTTTAATAAATCGTGGAAAATA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004610 phosphoacetylglucosamine mutase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01836 PGM3; phosphoacetylglucosamine mutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636882.1 lncRNA upstream 2111 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 16557 16495957 ~ 16501887 (+) False LOC120546561
TU250223 lncRNA upstream 18470 16493194 ~ 16499974 (+) True LOC120546561
TU250220 lncRNA upstream 23950 16493194 ~ 16494494 (+) False LOC120546561
TU250017 lncRNA upstream 104943 16411676 ~ 16413501 (+) True G184633
TU250247 lncRNA downstream 72274 16595940 ~ 16610380 (+) True G184796
TU250330 lncRNA downstream 158229 16681895 ~ 16686079 (+) True vegfab
TU250341 lncRNA downstream 201211 16724877 ~ 16726392 (+) True G184851
TU250480 lncRNA downstream 410030 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 757449 17281115 ~ 17299420 (+) False G184995
XM_039781549.1 mRNA upstream 27805 16487014 ~ 16490639 (+) True LOC120546559
XM_039782795.1 mRNA upstream 127814 16387758 ~ 16390630 (+) True LOC120547268
XM_039782793.1 mRNA upstream 131666 16384271 ~ 16386778 (+) True LOC120547267
XM_039782792.1 mRNA upstream 136588 16379479 ~ 16381856 (+) True cenpw
XM_039781847.1 mRNA upstream 143230 16357572 ~ 16375214 (+) False tpd52l1
XM_039782618.1 mRNA downstream 4323 16527989 ~ 16534031 (+) True ccnc
XM_039782711.1 mRNA downstream 12645 16536311 ~ 16544495 (+) True faxca
XM_039782712.1 mRNA downstream 13149 16536815 ~ 16544495 (+) False faxca
XM_039781922.1 mRNA downstream 65184 16588850 ~ 16597991 (+) False tmem63a
XM_039781923.1 mRNA downstream 65527 16589193 ~ 16597991 (+) False tmem63a
TU250012 other upstream 116341 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 550321 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 802160 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 802160 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 854870 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 241879 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 302028 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 769988 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 818171 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 818171 17341837 ~ 17365977 (+) False map7b

Expression Profile