RNA id: XM_039782712.1


Basic Information

Item Value
RNA id XM_039782712.1
length 4287
RNA type mRNA
GC content 0.43
exon number 6
gene id faxca
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16536311 ~ 16544495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGAGTCACGGTAGAAGCTGCAGAGCTCATCACCTTCCACACTCAGGCCTCTTGGGCCAGATCAGTCTGAAAACCATAGTGGTGATTCTGTTCATAGTGTCCAACTCTCCCAGAAAGGAGGAAGAGCTGGACTCTAAAGATGCCATCATACTCCACCAGTTCTCCAGGCCCAAAACTGGCGTCCCGTCCCTGTCCCCTTTCTGCCTTAAGATGGAGACCTACCTTCGTATGGTGGACCTTCCCTACCAGAACTACTTTGATGGGAAGCTTTCACCACAGGGAAAGATGCCATGGATTGAATACAACCAGGAGCAGGTGTCTGGTACCGAATTCATTATTGATTTCCTGGAGGAGAGGCTGGGCGCGAGCCTCAACAAGAGCCTGACGCCGCAGGAGAAGGCCATTTCTCGTGCCATCACCAAAATGGTGGAGGAGCATTTCTACTGGACCATAGCTTACTGTCAGTGGGTGGACAATCTGGAGGAGACCCAGAAGATGCTGTCAGTGAGCGGGCCGCTGAGTGACCTGCTCAGGTGGATCCTGAGTCACTTGACCGGCGGGATCGTCAAGAGGGAGATGTATGGGCATGGCATCGGGCGGTTCTCTGAGGAGGAGGTTTATGCCCTGATGGAGAAGGACATGCGCACCCTGGCCACTCTCCTAGGTGATAAGAAGTATCTTATGGGCTCTAAGCTTTCAACAGTAGACGCTGCAGTGTTTAGTCACCTGGCCCCTGCTATGTGGACGCTACCAGGAACACGGCCGGAGCAGCTGATCAAAGGGGAGCTGATCAACCTGGCCATGTACTGCGAGCGCATTCGCCGCCGATTCTGGCCCGAGTGGTTCGTGGACCTGGAGGACTTCTGCTACAGCAACACCACAGAGGGCAGCGACTCGCAGTCCAAACTCCCCGATCTGGGCCTCTACTCCCGCACGGACACTTTCCAGGAcgatacacacacgcacacttcaCACACTGGCACACCAAAGGACCCTCTGTCACCTGACAGCGACCAAACAGGCCACTCGCTGTATGACTCTGACATGGACACGGAGTGCTCTGAAATCGACAAGTGTTGACAAAACATACACGTGTAGTACACACCACATACACGCACACCACAGGAGGGAGCTgcatccccccctccccccctactTATTTGAACAGAAAATAACGGGGGAGTATTGTTGGTGTCTCCTGTGTCAGTGAAAAGGTTGAGGACGTTGAGGTCTGACTAGCACACTGTGGTGGAGGAATGACTGCAGCAGAGGGAAAGGGAGTGAAACATGGTttaaaagtgaagaaaagtgacctatggagagaaagagaatgacAAAGCAGAAAAATTGCAGTGCAGGGAGAAAAGAGAAGATTGAAAACAAGGAGTAAATGACGCCACTGCTGATAAACTCCTCCACGTAGTAGACGTCATCTGCAGTCACAACTTCTACCTGGTCTCACGTTGCCGTAACCATGGCAACTAAGTATGTGTGTGACCCCCCATTGTCCCTGTAGAAACTCGCACCACCTagccttgtgtgtgttttgactaACTGAACCCTTAACGCCTTGTATTGATATGACATCGACACGTAGGGAACTGTACAGTGATTCATGTGAATGAATTCAATTCagtgtaaatatataaatggaTCAGATTTAATAGATTATATATGAGTATAAATAGTATAGATAGCCTGCAAATATAGAATCATCCCCTCTGTCATATGATGTAAATGCTGTAGGTGTTTCTACTTTGTGTTGCACACAATGACTCAACTTGTCTTGTAGTAGTCTCCACACTGCTGGTCTAGGATCAGTATAAGGAGCCCTTTGACCTCCTGTACTATATGAATCTGTCTACACAACTGGGATATTACAGTAATGCCTGCTGCCCATATTTAAATAGTGCAGTAAAAGTTCATGGAAGATAACGGATAGGAAACTGCAATTTGCCATAAGCACTTTGAAACTATCATTTGTCTTATTGAGAAAATTATTGTGCCAAAACGAACATGTTAGAAGCGTAATGTGACATAATATGTTGTCAGACGCCTGTGTTTTGTCATTGAGGACAGTAGCTTTGGGTCAAATAGACATGCATTCAATCCTTGAGAGCGAGTCAAACAATCATGTAGAAATAGATGAAATAGATAGTCTGAATGAAAGTGCATGGCTGGTACGTGCCAATGAAAATCTCCATTTACACTTCACATAGATCATTTTATCGACATTTATTTGCTGGCTTATTCATTAAGGTTGATGATGTAGTTTGTTTTTTCGGTGCCTCTGGCCAAATCAGCCACACAAAGATGTAGTTGATCCTTTTCAGCAGTTCAGTTGTTGTGATGGAAACTCTATGATTCAAAAGGAAGCAATAACAGAGCAGGCGCAGGTTAATGTTATGCTGTAGGCTGCGTGCTGTGTGTGAAGGTTCGGTGCaggttttatgtgtgtttgtcactCAGCAAATGCACATACCAacatattgtgtgtttgtgaggtgAGGAATATGGATGCAAGCAAGGGGTATTCTGTCCATGCTGTGTATGGATGAGTCACCCTCTGTCTGTGAATGATGGCACACTGGTGTCGTTTCACAGCACAACCTTTCctttctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacatacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaaatagagagaatttaaggattttttttgttgtgttttcaaaaataatcaTATTGGCTAAAATATTGTTCCCAAACTGTTTTAACTCTAAAATCCAGCATCAGTCAGGCTTTCCTTGTGAAGATGCTGctcaaaaagaaaatgtatgagTTAGAAATATGTAGCATTAATATGTAGCATTATATAGTGAAATGAGAAGAAACAATATGATATCATAAATCTAACACTTAGCAGAGGGTTAGGTTTTAAGGTCATAGGGGTTAGAAAGACGTCATTACGACTCTGCTGTCATTTGTTGAATAAGACCATGATGTCGATGGCATGATGGTAAAGAATATAATGATGTTTAAATGAAAGCACCATTTTCCTCCGTGTGGCTCCTTCACTGGGTTTAACAAAATAATGTCAAAAACATTAATATGTAAGGCTTCAATTCAAAGCCTTTAGTAAAGAGACAGTaaaacctttgtgtgtgtgaattccAATACAATAACTAAAAAAATGAACTGAAAAATGTCATTCTGTGTCTTAAAACCCCTCGCCTGCATGTCAGAATATCAAAACTGACTCCTAAAGCTGTTTACTTTGTATCAGTGCCAGCATATGacttatgtttttatataaatttattatttatttatttaatgttgtgtatatttattaattttgatGGTGGATGTGATTAAAATGAGGAAACAACAATAttgttaataatttttttttaacttttcttcttctgtttacAAATTTTTTCGTCTGGCTGAGAGTTTATTGATCTGTGTAATAGTGCAATACTGTAGATTCTCGGACTTCCGCTGAACTAACTGCATATTTTCACGTTGTCATTGCTGTAATTGCATGCATGTCCATGTTTTGAAATTTGATGTGATAAATGTTATATTCATATCATAATATCAATGTCATTGTGTTCAAATATTACAGCCCCTCATCTGCTGCACAGTTACTGTCAAAAGTAGAACTTTTTACTCTGCAGAGCTTCAGTTGAAATCATAAAAAATACATGAACTATTGAGGTGAAATACCAAACTGGCTGCTAGAGCTCAGATTAGTAAGGTGAGGTCAGCCATCCTGCTGATCAGCTGATGATCGGTGTCCCTCTTGTAAGCTCACCCATTACTGGAAGAACTGTCCTTCCAAATCAGTGTCTGTAGGCAACTTCATCTGTCTCAGTGTTCCTCAGCGGTTTGAGGTCAGGGGTCGGGCGTTCAGCCCTGCAGTGTGTGTCGCTCTGTATTGAGATTTCTGCTTGTAGACTGTAGAAGCCATATTGTCtcgtggtgttgtgtgtgtgctgaaacACTTGTGGAATCTCATCAAACTGTAAATAAGAGAgacaggggggaaaaaagtcaaattaaTATGCAAACATGAATTAAAAGAAATCGCTCTGTACTCATTAAAAAAGATTCTTATGAATGTATCATACCTAGAGATAAAAAGCTGTATGACGATGGATTACTCCTAATATTTCATTAAATATAGCTGTGGTATtttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636882.1 lncRNA upstream 20482 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 34928 16495957 ~ 16501887 (+) False LOC120546561
TU250223 lncRNA upstream 36841 16493194 ~ 16499974 (+) True LOC120546561
TU250220 lncRNA upstream 42321 16493194 ~ 16494494 (+) False LOC120546561
TU250017 lncRNA upstream 123314 16411676 ~ 16413501 (+) True G184633
TU250247 lncRNA downstream 51445 16595940 ~ 16610380 (+) True G184796
TU250330 lncRNA downstream 137400 16681895 ~ 16686079 (+) True vegfab
TU250341 lncRNA downstream 180382 16724877 ~ 16726392 (+) True G184851
TU250480 lncRNA downstream 389201 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 736620 17281115 ~ 17299420 (+) False G184995
XM_039782618.1 mRNA upstream 2784 16527989 ~ 16534031 (+) True ccnc
XM_039782672.1 mRNA upstream 13149 16518444 ~ 16523666 (+) True pgm3
XM_039781549.1 mRNA upstream 46176 16487014 ~ 16490639 (+) True LOC120546559
XM_039782795.1 mRNA upstream 146185 16387758 ~ 16390630 (+) True LOC120547268
XM_039782793.1 mRNA upstream 150037 16384271 ~ 16386778 (+) True LOC120547267
XM_039781922.1 mRNA downstream 44355 16588850 ~ 16597991 (+) False tmem63a
XM_039781923.1 mRNA downstream 44698 16589193 ~ 16597991 (+) False tmem63a
XM_039781924.1 mRNA downstream 45550 16590045 ~ 16599462 (+) True tmem63a
XM_039781926.1 mRNA downstream 60891 16605386 ~ 16609726 (+) True rsph9
XM_039781925.1 mRNA downstream 61044 16605539 ~ 16609726 (+) False rsph9
TU250012 other upstream 134712 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 568692 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 820531 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 820531 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 873241 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 221050 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 281199 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 749159 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 797342 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 797342 17341837 ~ 17365977 (+) False map7b

Expression Profile