RNA id: XM_039782780.1


Basic Information

Item Value
RNA id XM_039782780.1
length 4307
RNA type mRNA
GC content 0.46
exon number 9
gene id lca5
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17791853 ~ 17799948 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACTGCAGGGAATGCTGCGGTTGCCATGGTGCGGCGTCAGCGGTAGGAATGGAGCAAACCTCAAGCAAGGCGTGGACCAAATAAATAGCTGTCAGGATTATACTCCGGTTTGCTGTTTAACTGTGGATAATTACAGGACGACGCACTTAAAAAAAGATAGCCATGACAGTTTCCAAATAGGGCGGACGTCTAACGTTATGCCTTCTTATATGTaacggtagctagctaagttagctTAAGTTCATAGTATCTtgctagctagatagctagctagctaatagtTGAAGCTAtgtagcgttagctaacattagtcGATCGAGTCCAAACAACAAGCCGTGAATTGCTACAAAGTTAAAGGTAAACCAGTCGGCAAGATTTAAAAGAGTAAACGCGGAAAACTGACAGGTTGGTGCCAGCAGACGCCGAGCGGTAACGTTAAAACACACTCCACCTGTTGATgCACAGCATTTCTTCTTAAAGTGACAACATGGAATCTGAAAACATATCTGATCCGTATCAAGACAATCGGGATGTTATTCAAAGTCGTCAGTCACTCCAGAGTACAAAGGAAGATTCCCGAGCATCATCTttccaaaaacacaaaaagaactACCAGGACAAGATCCAGGATGAGGGGGAAAAAGACAGCTGTGTTGAGAGTAGATCCAAAACCCGAACCTGCCGTTCAGATCCAGACCGGGACCAGATATCAGATGAAGAGGGACAGAGAAGTAGTCGGTCGTTGTACTCAGAGGACTATGAGAATGAGTCTCCTTCAGACCGCTCGATCTCCCCATACTCCCGGTCCCGGACTCCATCCCCTACTCCTCAAAGAGGGGTGCGGACAAAGAGGATTTATAACAGCCCCCTCTACAAGACAGTTGGTGTGGGGCGCCGGGGTGTGTCTCGCCCACAGCGTCCAGGTGGCCAGCCTCTGATCCAGCAGCATCGCAGGGGAATGCTTTCACAAAGCAAGGAGTCCACACCGCCTAAAGACCTGGACCTGGTCACCAAGAGGATGCTTTCAGCCCGCCTGCTGAAGATCAATGAGTTGCGTAACTCCCTTGCTGAGCTGCAACAACGCACTGATGAGCTGCAGAAGGAAAATCGAGTTCTCAGACAGCTTCAGGTGCGTCAAGAAAAAGCCCTGCATCGCTACGATGACACAGAAAGCGAGATTTCCCAGTTACTGTCACGCCACAACAATGAGACCCACGTGCTGCGTGAGCGGCTCAGGCGTACTCAGGAGCGGGAGCGGGCAACCGAGCGGCGGATGAAGGACAGCGAGGAGCAGCTACAGAGGAGTCAGGGGACAATCGCACGGCTGAAGAAGCTGGTCGACCAGCGAGAGTTAGGAACCAGAGACGAGCTAAGCCGCAAGCTAGAGGAAGAGAAGACCCGGGCACAAGAGGCGGAACGCAAGATTAAGGAGCTGGAGCGTAGCATGGAGCTGAGCAACAGCAGTTACCAGAGGCAGCTGGctgcagagaggaagaagacAATCAGTGCCCAGGAAGAGATCAGGACTCTGCAGGAGGAGCTGGAACGACTGACCATTAAACTCAAGgagaaagagagagaactaGATGCTAAGAACATCTATGCCAACCGCGTGATGAAACCCGCACTTAGGAAAGATGTTGACAGTGGCACAAAGCGGAAAGTCCCCAGCAGGAGCAGCACCAAGGCAGTGCAGACTAAAGACAGGACATCCAGTGTGGATTTCCCCACACCTCCCCCTGCTATTACTGATGCCAATGAGTACATTGAACATGCACCTGACGAATACCTATCACTCAAGCAGGAGCTCGACGGAgtggacagacaggcagagacagaagacagacaTCAAAAGTGGGAACAGCAGAAgacgagagacagagaaaaagacagagacaagGAGGAGGAGTTGGTGAAGGAGAAAGATAAAGagctggagagagaggagaagcgGCAACTCAAATTGGAGCTTAATGTGCTGGAGGAGAAGGCAAAGAGACTAAGAGATGGCTGGGAGAAaacaaaagaggaagaagatagAAAGAGGACAAGCTCCCTGTCAAACCAGGAGGAAGAGAACAACCGGAAGCGTGGCCATGTCCAGGAAGAGGTGCAGAGGTGGAACCAGGAGGTTCTGGCCAATCAGCAGGCAGCAGCGGAAGCACGCCGCAAAAAAGAACAGCTGCTGGCTAAGATGCGTGAAATAGACGGTCAAGACAACAGAACCCAGGACACCATGTTTGCTGAGTCTAGTCCTAAAGCTACCAGTAACTATTCTTCTCCTCAGCAGAGGAACCTTAACTCTTCCATTTTTAACCACACCGAATCAGAGGATTCGGCCAGTTTGCGCGCTGGTGCTGGAAGCGGGGAAGGCGGAAAGAGAAGATCAGGCATGGAGGGTGGAGCTGCTACAACAGGAGTAGGGAGGAGAGCACCGCGGCCCCAAATCTCCAGTGACGACTTGGCATTTGGAAGCTACGCGCCTTCTTTCGGGCGTTCAGCTTCTCGAGGTTCCTCAGGCTTCCCACCACCTCCGCCCAAAGAGGACAGGGACTCTGCATTAGAAGCAATAGGTGTTTTTAGAGGGGTggagatggagaaagaaaaggagatggAAAGAGGGTCGGGGAAGGAGAGGAAGTCTAGCCTCATGCAGCAGCTATTTGGTGCCCTGGCAACACCTGCTTGTGACAGTGTGAGCACCTCCAATAAAATGGAGGTCCTTAACAGTCCTCCAACTACCAATGGAGTGCGTTCAAGAAGGGAAGGACTGCTCAGCTTCAACTCAGGGTCTTCCACCCCTCCAGCATCCTCCCTGAACACCCTGCACGTGGCAGAGAGCAGGCCTGCCATCCGTGCCATCACCTCATTTGATGATGACATAGAGGAGCTTGTCTTATAGAAGGCCATCAATGATAACCGTGAGGTGATCTCCAAAAtaagagatggagggatgaaCACGGTCTGTATATCTAAGTCCGAACACTATTGATTTCCcaatacacattttaaaatgatcaaCAGAACCGAACTTAGAAGCGAAAAAAGGTTTCTACAAAGAATCTAAAATACTATATGACAATATAAATGATAAATCATTTAACTTGTGTGACTGTTTTTAAGGTTTCATATAGAAAATCTTTAATTTAAAGTGATCTTCGAACATTTAGATACACGTGTGTAGACACATGGATGGCTGAAACTTAATATAGGATTTTTTTACCCTTTGATCTGTTTTAATGCTAGTTGCACTCGTAAGTGTTGTGCAGTGTAGACAGTGGCTTTTACTTGTTACATTTGAAGAGACTTCTCAGGTTGCCTTCCAGTTTTTCTGATAGAATATAACTGGTAGTTTATCCGACCAATGCCACAACAATAgcaacaccacaacacacagaaTCCCTGCCCCGAGAATGTTTGTCCAATCAACAAATGCAGGTCAAAAATGAAACTGACTTTTGCTGCAAATCACGTCTCTTTGCATTTCACATTTTAGCGCTTTGAATATTTTGAAGTAATAATAGTTTGGGGTTGCTGTTGTTGGATAGTTTGGGATCCTACAATTCTTTGTGCTTCTTTATATGGACAAATGTTAGTATTTGGGCACAGACattttggagttgttttagaGGCCATGCCATAATAATCTACCACTAAGGAATATGACAATCATAGTATGTTTAAACTGCACCCTGGTCGTCtgtgaatgtatttttttttttttttacaactttatGAAAATGGTTTTCTGCAGGTTATGACCACCAATATCATATTAATACTGATTAAATGTCCCATTACAAAGAAATAATTTACCCTTTAGAAAAATGGTAAAGTCCTATTATCAAAGTATGCTATAAAGTGAAAACAACCTCATTGCAAGCTAGTGTAGTTTTGTGTTACATTAAATCAGTctatgaaatgttgtgttttaacaAAGAAAAGTTGTTCCTATTTGATTCACTTGACTTGAATATATTGTAAAACAGTAAATATCAATATTGCCTGGTATTGTTCTGTTCTGGGTCCTTGTCCCCGTCACTGATATGCTTCTTGTGATGACAGCACCACACTCCTGCAGACAATCAGCACTAAaaccttcttatatactgtctatgactAAAACCAGTGACAAAAATGCTCTacttttatctatttatttatgttgAGTTCTTATAGACTTACATTACAACTCCAAATGTGGCACAAGGCTATTACCACATTGTGACAATAAGCTGTACAATTGATACCTGTATATTTTTTCACATTGTTTGTAACAGATTAAAACTGTGGTGATCGGTctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250777 lncRNA upstream 27061 17763969 ~ 17764792 (+) True G185156
TU250773 lncRNA upstream 28117 17760676 ~ 17763736 (+) False G185155
TU250930 lncRNA downstream 257463 18057411 ~ 18059367 (+) True G185254
TU250934 lncRNA downstream 303077 18103025 ~ 18104904 (+) True G185258
TU250935 lncRNA downstream 303077 18103025 ~ 18104517 (+) False G185258
TU250941 lncRNA downstream 338945 18138893 ~ 18140219 (+) False znf513a
TU250952 lncRNA downstream 356022 18155970 ~ 18158108 (+) False LOC120546825
XM_039782454.1 mRNA upstream 33439 17709799 ~ 17758414 (+) False eya4
XM_039781499.1 mRNA downstream 142 17800090 ~ 17808692 (+) True fam167ab
XM_039781823.1 mRNA downstream 88693 17888641 ~ 17904513 (+) False mtmr9
XM_039781821.1 mRNA downstream 88697 17888645 ~ 17904513 (+) False mtmr9
XM_039781822.1 mRNA downstream 88909 17888857 ~ 17904513 (+) True mtmr9
XM_039781825.1 mRNA downstream 106793 17906741 ~ 17913030 (+) True tdh
TU250755 other upstream 105455 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 118967 17669172 ~ 17672886 (+) False G185145
TU250558 other upstream 425876 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 425876 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 496152 17293654 ~ 17295701 (+) True G184996
TU250889 other downstream 116905 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 221015 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 221015 18020963 ~ 18052071 (+) False fndc4a
unassigned_transcript_1081 other downstream 1132368 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 1404206 19204154 ~ 19208096 (+) False LOC120546624

Expression Profile