RNA id: XM_039782793.1


Basic Information

Item Value
RNA id XM_039782793.1
length 1745
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC120547267
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16384271 ~ 16386778 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctaaaaaaaattatctacTAGACACAACTACTTCTTTAAAAAGTCAATTATCGGTATGTGAACTCAACAAGTTTCTACATCACACTTGTGTAAGTTGCTTCTTATTGGATCACCGTTGGCAtccagttgtgatgtcacaaagtGGTGCTTGTACATACACGTCTTATACTTCGATTTAAAGTGAGCACAGATAAACTTTCCTCCTTCTGCAGCTGAatctgaaaacagcattttGGTGTCAAACTCAGCAAAGTGAAGGTCAAAAATCAGAGAGAAGTCACAATAGGCAGAACACATTTTTCGGTGGAAGGGGacttaaaaagaaagaattgtTTAAATTTTGAGTAAACCGATGAGGATGAAGTTCCCCAATAACttaataagttattattacaccGTTTGATGTGATAATGGCTCAGTAGGAGGGTCGTGAAGGACTGGTAACATGGGAGAGGAGATTGGGAGTGTGGGGGAAACAGCAGAGACAAGCCCACAGCAGCTTACCCAAACTTAAATCTGGGTTGCGACTATTCTATGATGGTTACTCTTCTGTTTGCATTCTTCATGGCATTCAGCCGGCTTGAGTGATTTCATGGAATGCACATGAGATTTTTCTTCATGAAAACATTAAGCCGAACTCTGCGCTCGACCGCTCTCTCACCCAGACTGGAGTCTCTACGTTGGTCCATTTGAATGAATTTTATCggatttctttttatatttatttttttaaatgtacatcATGGGATTTTGGATGTGATGCAAGGCGTCCTCGCTGACTGGATTGATGCCGTACTGAAGGTGAAGGACAATGTGGATACCATTGTTAATTTGGATTCTGCACTTCATGAATCTTACAAAAGGCCTAGAGAACACAAGACGTAGCTCCTCTGTTAGCAGACTCTGTCCAGCAGGTTGTGCGACATGCTCTGCTCTGAATGGCTGTCTCTCCTGTTTCCCTCGCCTTTTCTTCCACTTGGAGCTGGATGGGATGCGGCAGAGGGGCGCCTGTCTGTCCTCCTGTCCCCGGGGTCACTATGGCAGGCGCTCTCCACACATCAGCACCTGCACCAGGTGCAAGGTGGACTGCGCTTCCTGTTTTAGTGAAAATTTCTGCACACATTGTCACCCGGGTCACTTCCTGTTCCAGGGCAAATGTGCAAACAGCTGTCCATATGGGCTGACGGAAAACACAGTACTGCGAGAATGCACAGtgtgttctccaggctgtgaggtgtgtgtgaggaggAACATGTGTGTGAGGTGTAGAGCAGACCTGTACTTTCTCCACGGTCAGTGCCATCTCACCTGCCCGATGGGATTTAAGCCTGATGTGCGGCTTATGCAATGCATCCCCAAAGTGCACTGTGAGGTTGGGGAATGGACAGGTTGGGGTCCATGTGTTCGGAAAAGGAGCATGATGGGACAGGAGACACGTAACAGACAACTTCTGCGGTCTCCAAGTGACGACGGTGACCCCTGCCCGCATGTGTCAGAAATCAGGAAGTGTGTCATCAAAATGAGACCAAAGAGTCCAAGTAGGTTGTAATAAGTTAAAAAGAGAGCCCATTAGATTTGAATATTTGTTGATATTGCAGAGATATTCAACTTGCACCTTTTTACATTTGCTGGTTAAACTATTGTAAATTGAAAACTATTGTAAATTGTTAAGATGTATTCATCTGTTTTTATGCAAtccaacagaaaaaaataaataaataaggggTTGATGGATATTATGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250006 lncRNA upstream 2490 16379507 ~ 16381781 (+) False cenpw
TU249994 lncRNA upstream 27723 16291211 ~ 16356548 (+) True G184618
TU249948 lncRNA upstream 336590 16045809 ~ 16047681 (+) True G184584
TU249901 lncRNA upstream 456609 15926071 ~ 15927662 (+) True G184540
TU249894 lncRNA upstream 462473 15914645 ~ 15921798 (+) False LOC120546249
TU250010 lncRNA downstream 14130 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA downstream 15424 16402202 ~ 16404077 (+) False G184628
TU250017 lncRNA downstream 24898 16411676 ~ 16413501 (+) True G184633
TU250220 lncRNA downstream 106416 16493194 ~ 16494494 (+) False LOC120546561
TU250223 lncRNA downstream 106416 16493194 ~ 16499974 (+) True LOC120546561
XM_039782792.1 mRNA upstream 2415 16379479 ~ 16381856 (+) True cenpw
XM_039781843.1 mRNA upstream 9057 16357572 ~ 16375214 (+) False tpd52l1
XM_039782795.1 mRNA downstream 980 16387758 ~ 16390630 (+) True LOC120547268
XM_039781549.1 mRNA downstream 100236 16487014 ~ 16490639 (+) True LOC120546559
XM_039782672.1 mRNA downstream 131666 16518444 ~ 16523666 (+) True pgm3
XM_039782618.1 mRNA downstream 141211 16527989 ~ 16534031 (+) True ccnc
XM_039782711.1 mRNA downstream 149533 16536311 ~ 16544495 (+) True faxca
TU249895 other upstream 416148 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 667987 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 667987 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 720697 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 1065435 15301925 ~ 15318836 (+) True G184458
TU250012 other downstream 12660 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 378767 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 438916 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 906876 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 955059 17341837 ~ 17365977 (+) False map7b

Expression Profile