RNA id: XM_039782804.1


Basic Information

Item Value
RNA id XM_039782804.1
length 2390
RNA type mRNA
GC content 0.51
exon number 17
gene id zc3h14
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18402072 ~ 18409077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAGCCACGTGATCATACGTCACTAACATTTGTCTCTGTTCGTTAGCAGTGAAGCTGAAAACAGTCGcttcttttttaaacttatttaCTTGAAAAAACGAGAAGCATGGAGATTGGGACAGAGATAAGCAAGAAAATAAGAGCTGCTATCAAAGGCAAGCTTCAGGAGCTCGGTGCATATATTGATGAAGAGCTTCCCGACTATATTATGGTGATGGTAGCAAACAAGAAAACCTCCCAACAGATGGCTGACGATCTCTCCCTTTTCCTTGGAAACAACACTAGCAAATTCACAGCATGGCTACAGGGTGTACTTGAGAAGTTAAGAACTGTTGCAGTCGAGCCTGCATCCCTCAGTGGACATCAGCTCCAGTCTGACAGTGGTACTTTTGCTGGGAAGAGCCGCTCATCTCTAAGTGAGGACAGCAGAGCAGAGGAGTTGAAGGTGCTGACAGTGTCCAGCTCACGCTCTGATAGGACTGAAGCACGCGTCTCCAGTTCCGCTCATGAAAGCAGGAGAGGCAGCTTGGAGAAGAGTTCCTCTCGACTTACCTCCACCGTTAAGCCCCTCATGGAGCCACTCCCCTTAGAGGCCGTTATTGACATCAAACCAGAGATGGACGATGACTTCATCGCTGAGGATCCTGTAGAAATAGGCACCAACCATGGTCGAACACGTGCAGCTAGTAGACCCACAGCTGAAATCTACAGACCGGGTCAGAGCAAGTTTACATTAGCAAGCTCTGCAGACGTGTGTCGACCCTCCGAAGGATCCTCTCACTCAAGGCAGCAggacagcagaagcagcagaacCTCCAGAACCGGATCCAGTAAGGAGGAACTGTCCCGGAAGCGTAAGGCGCCGGTGGCAAGTTCAGTGGTGCGAGTGAACCGAGCAGCAGACGAGGACAGCGATGATATGGAAGAGGAAGACGCAGGCTATGGAGGCAGAGGCCTGTCCAGTAGAGTGTCCCTACCCTCCAAACCAGAACGCAAGCCTACTCTCCCTCCAGCCAAGCAAGCCAACAGAAATCTGATACTGAAGGCCATCTCCGAGGCCCAGGACTCAATCACCAAAACTACAGCCTACCCCACAATACCACAGAGGCAGACTGTTCCTGTGGCACCTCGTACTCGTGTGGCCAGCAGTGAAGAGATGACTGCAGCCATCCAGCTGGTCCAGGAGCATCTCCACAGCCTGGCCCCCAGGGTTCAGGCCTACACCTCTGCAGAGCTCCCTCCTTCCAGAACACCTGCCCCAGCGAGATCTTTAGCTTCACGCCTCCAGTTGGACTTAGCAGAGAACAGTGAAAGAGGAGAGCAGAGGGACTATGGTGTAGAGGTCACTGCAGGCAGTGAGGCAAAGCCATTTGATACCCGCTCCTTCATAGTGAGTCCACCGCAGCTGGGAGAATCTACAGCCAGAAGCCAGCAGCGTCCTCAGGCCAAAGGGGGAGTCCAGTCTGCTTTACCACGCACTGTCCAGgctagTAAGGAGAAGGGCGACTCTGTTAGTCCCAAGTTCATAGTGACATTAGATGGGGTGCCGAGCCCGCTGGGAAATCTTGCCGACTGTGAAATGGAGCTGGAGGATGTGAGACCGCCCACAAGGGTCACCGAGGCGACCGTCCACGCCAACAGGGAGCCCAAAGTCAGCATCCTTCACAGACTACAGGGAAGACTCACATTACCAGAAGATGATGTGATGGATGTTGAGATGGCGGAAGAGGATGCCGGCCCTTTAAAGAAACAGAAGGTGATGGAGCGCTGCAAGTTCTGGCCGGTCTGTAAAAGTGGAGATGATTGTATGTACCATCACCCTACAACACAGTGCAAGACTTTTCCCACTTGCAAGTTTGGGGATAAATGCCTTTTCGTGCATCCAAATTGTAAATACGATGCCAGGTGCACCAAGCCAGACTGTCCCTTCACTCATGTCAGCCGAAGAAGCACAGCTGCTCCTCCGCCCAGGCCAGCAGTGCAGCCAGTCCAAACCACTAGTGTGTGCCGCTTCTTTCCAGAGTGCAAGAAGATGGACTGTGCGTTTTATCATCCCAAGCCCTGTCGCTTCGCGGCACAGTGTAAACGAGCTGGGTGTACCTTCTACCACCCGACCACATCTGTGCCTCCGAGACACGCCCTGAAGTGGACAAAAACACAGACCAGCTCATAAAGTCCAGGAACAGGAGTCTGCTGATGGTTAACGTGAAACTATGGAAGATGTTCTGTATCTGTCGACAGATTTTCATTCTTCTTTTCAGTATTTAACTgttgtttcatttcattttaatgtatTGTTTGGACTGATTTTTAAGAGTTTTGTatggaaacaaaaaaaggtttcGCTCATGCTCTCTGAATATTAAAATGCTCCACAATGAACTTTAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251071 lncRNA upstream 4902 18396866 ~ 18397171 (+) True G185374
TU251057 lncRNA upstream 87594 18314228 ~ 18314479 (+) True G185361
TU251056 lncRNA upstream 93338 18308335 ~ 18308735 (+) True G185360
TU251055 lncRNA upstream 96496 18305254 ~ 18305577 (+) True G185359
TU251053 lncRNA upstream 99108 18302698 ~ 18302965 (+) True G185357
XR_005636953.1 lncRNA downstream 34875 18443952 ~ 18464028 (+) True LOC120546827
XR_005636954.1 lncRNA downstream 34875 18443952 ~ 18462608 (+) False LOC120546827
TU251124 lncRNA downstream 217204 18626281 ~ 18635052 (+) True ylpm1
TU251126 lncRNA downstream 227297 18636374 ~ 18640381 (+) True G185414
TU251127 lncRNA downstream 230015 18639092 ~ 18640381 (+) False G185414
XM_039782508.1 mRNA upstream 43160 18347236 ~ 18358913 (+) True LOC120547097
XM_039781471.1 mRNA upstream 108238 18283900 ~ 18293835 (+) True chrna2b
XM_039781472.1 mRNA upstream 119371 18273829 ~ 18282702 (+) True si:ch211-142k18.1
XM_039781473.1 mRNA upstream 119371 18280266 ~ 18282702 (+) False si:ch211-142k18.1
XM_039781474.1 mRNA upstream 203570 18194483 ~ 18198503 (+) True nme6
XM_039781885.1 mRNA downstream 4935 18414012 ~ 18419160 (+) False batf
XM_039781884.1 mRNA downstream 5360 18414437 ~ 18419160 (+) True batf
XM_039781883.1 mRNA downstream 10579 18419656 ~ 18442262 (+) True flvcr2b
XM_039781881.1 mRNA downstream 15070 18424147 ~ 18442262 (+) False flvcr2b
XM_039781879.1 mRNA downstream 15070 18424147 ~ 18441066 (+) False flvcr2b
XR_005637008.1 other upstream 347147 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 350002 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 484825 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 715675 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 729187 17669172 ~ 17672886 (+) False G185145
unassigned_transcript_1081 other downstream 523239 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251420 other downstream 795077 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 1020518 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 1020518 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 1020519 19429596 ~ 19539208 (+) False nhsl1b

Expression Profile