RNA id: XM_039782857.1


Basic Information

Item Value
RNA id XM_039782857.1
length 662
RNA type mRNA
GC content 0.53
exon number 5
gene id faua
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14699966 ~ 14702153 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATTAACCGCATCACCTTCAACCTCCATAGCGTGGTGGGCGTGGCCACTGCTTTCGACATGGTTACGTAAATCCGCACATGCGCAGTGTCGGCCCTTATACAGCCCTTTCTATGCCTAGCGTTGAACGACTAGCATCAAACGAGCATCAAGATGCAGCTCTTCTTGCGTGCCCAGAACACTCACACCCTTGAGGTGACCGGACAGGAGACTGTTGGACAGATCAAGGCCCATGTCCAGGATCTGGAGGGTCTCCTGGTTGAGGATCAGGTGCTGTTGCTTGCTGGTAGCCCACTGGAGGATGATGCTTGCCTGGCATCCTGTGGTGTCTCAGAGCACTGCACCCTGGAGGTAGCTGGCAGGCTGCTGGGAGGTAAGGTTCACGGCTCTCTGGCCCGTGCTGGAAAAGTGAGGGGACAGACACCCAAGGTTGACaagcaggagaagaagaaaaagaggactGGCCGTGCTAAGCGTCGCATCCAGTACAACAGGCGCTTTGTGAACGTGGTGCCCACCTTCGGAAAGAAGAAGGGACCCAACGCCAACTCCTAAGTGTTCCAATGTCCAAAAGGAGAAACCTGATCACATCCCATCGGTTTTTACAAGTTGAAATGTTATCCTGCTGTACAGAATAATAAATTTGGCTTGGACAAAAGAGAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02983 RP-S30e, RPS30; small subunit ribosomal protein S30e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249638 lncRNA upstream 32379 14667226 ~ 14667587 (+) True G184345
TU249636 lncRNA upstream 37485 14662094 ~ 14662481 (+) True G184343
TU249635 lncRNA upstream 38836 14660746 ~ 14661130 (+) True G184342
TU249634 lncRNA upstream 39231 14660319 ~ 14660735 (+) True G184341
TU249632 lncRNA upstream 43719 14655634 ~ 14656247 (+) True G184339
TU249714 lncRNA downstream 407481 15109634 ~ 15110077 (+) True G184390
TU249710 lncRNA downstream 408090 15110243 ~ 15111605 (+) False G184389
TU249711 lncRNA downstream 408090 15110243 ~ 15111605 (+) True G184389
TU249709 lncRNA downstream 427323 15129476 ~ 15131771 (+) False hsp90aa1.1
TU249755 lncRNA downstream 471537 15173690 ~ 15174130 (+) True G184419
XM_039782853.1 mRNA upstream 473 14682241 ~ 14699493 (+) False prpf39
XM_039782852.1 mRNA upstream 473 14682242 ~ 14699493 (+) True prpf39
XM_039780905.1 mRNA upstream 65506 14629113 ~ 14634460 (+) False LOC120546154
XM_039780903.1 mRNA upstream 65506 14630105 ~ 14634460 (+) False LOC120546154
XM_039780902.1 mRNA upstream 65506 14631550 ~ 14634460 (+) True LOC120546154
XM_039781334.1 mRNA downstream 236765 14938918 ~ 14954916 (+) True LOC120546410
XM_039782494.1 mRNA downstream 411017 15113170 ~ 15116784 (+) True mgat2
XM_039782225.1 mRNA downstream 428164 15130317 ~ 15134860 (+) True hsp90aa1.1
XM_039782224.1 mRNA downstream 433214 15135367 ~ 15141393 (+) True hsp90aa1.2
XM_039782230.1 mRNA downstream 440550 15142703 ~ 15173582 (+) True ppp2r5cb
TU249525 other upstream 170596 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 318779 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 578452 14024484 ~ 14121514 (+) False LOC120546742
TU249175 other upstream 1452550 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 1549888 13145475 ~ 13150078 (+) True G183994
XR_005636833.1 other downstream 587521 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 599772 15301925 ~ 15318836 (+) True G184458
TU249859 other downstream 958420 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 992791 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 992791 15694944 ~ 15716284 (+) False dpf3

Expression Profile