RNA id: XR_005636997.1


Basic Information

Item Value
RNA id XR_005636997.1
length 924
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120546929
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 20626548 ~ 20628265 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTTCCAGCAGGCTTTCATACTGTTGAGGAAGTAATCAAGTTCATCACCCTGGTGATCTTCACAGTGACAGCTCAACATGCTGCAGTAAACAGTGGGCAGTTTGACTACTACTCCTGGGTGCCCAATGGCTCACTCCTGCTGCACAAACCTCCAACCACTAAGGGGCAGTAAAGCATGAACACCATTTTGGAGACCCTCCCAGATGTTGGGGACACAGTCAGCTTTGTCGGAATGGCTCGCCTGCTTTCAGAGACATACACAGATGCTGTTTCGATGGGTACATACCCCGAAGAACGATTCGATGAGCCTGCCCCTAAGCAGATGATTAAGGAATTTCAAGCAGAGTTGTCTTACCTCAGTGAAGAAATTGCAACAGGAAACTTACAGCTTGAAGTACCCTACACATATCTGAACCCTGCTGAGATAGAGAACAGTGTAGCTATTTAGGAGAGTCTGAGGGAGCCATTCTGCATGAGATGATTATATCCATGCATTTCTTAACACCTGTCTTGCAGGCTGGGAGGTGTGTTATACTTTGCATTTATTGATACAATAGGTGGTAGAGACAGTTTAGTGAGGTGCTGCATGCTGGGACAAGAGGACTATATTTTGGTTGTGCCCATATAATGGTGACATATAGACCTACAGTACTATGTTGAGCAGAAACTTAACTGATTAACACAGGCCACTAGTACCAATTGGGCTTTTGCCCAAAACAGCTAAATAATTGTGAAAGTGAATGGTTttatatttaaagttttttgCATTTATGTACATTTCTGCTTTGATGTTGTTGTTTCAGACTTCTACAAGTGCATAAaattcatatttatatataaatccaCAAAGCAGGAACACTCAAGTTCTGTATCAGCAATATAACTCCGGGTTTTATCTGTACTGTTTCTTTCCTGTAACGCAT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636841.1 lncRNA upstream 266939 20261785 ~ 20359609 (+) False LOC120546242
XR_005636840.1 lncRNA upstream 337792 20261785 ~ 20288756 (+) False LOC120546242
TU251786 lncRNA upstream 337793 20261809 ~ 20288755 (+) False LOC120546242
XR_005636839.1 lncRNA upstream 339684 20261785 ~ 20286864 (+) True LOC120546242
TU251724 lncRNA upstream 646458 19945093 ~ 19980090 (+) True G185869
TU251913 lncRNA downstream 64905 20693170 ~ 20702644 (+) True G186025
TU251924 lncRNA downstream 118052 20746317 ~ 20758806 (+) True G186035
XR_005636824.1 lncRNA downstream 361040 20989305 ~ 20991418 (+) True LOC120546176
TU252007 lncRNA downstream 391556 21019821 ~ 21023878 (+) True G186088
TU252015 lncRNA downstream 404376 21032641 ~ 21033182 (+) True G186094
XM_039782179.1 mRNA upstream 3917 20617250 ~ 20622631 (+) True LOC120546927
XM_039782178.1 mRNA upstream 3917 20617250 ~ 20622631 (+) False LOC120546927
XM_039782180.1 mRNA upstream 3917 20617474 ~ 20622631 (+) False LOC120546927
XM_039781448.1 mRNA upstream 633662 19977864 ~ 19992886 (+) False slc22a16
XM_039781447.1 mRNA upstream 633662 19977864 ~ 19992886 (+) True slc22a16
XM_039782183.1 mRNA downstream 576 20628841 ~ 20638714 (+) True epm2a
XM_039782184.1 mRNA downstream 577 20628842 ~ 20638714 (+) False epm2a
XM_039782185.1 mRNA downstream 964 20629229 ~ 20638714 (+) False epm2a
XM_039782910.1 mRNA downstream 250215 20878480 ~ 20881587 (+) True LOC120547338
XM_039782177.1 mRNA downstream 263143 20891408 ~ 20928761 (+) True mthfd1l
TU251678 other upstream 766343 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 978392 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1087240 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 1316478 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 1357514 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2950113 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2950113 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 3451338 24079603 ~ 24083104 (+) True G186975

Expression Profile