RNA id: XR_005637034.1


Basic Information

Item Value
RNA id XR_005637034.1
length 719
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id LOC120547176
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13952385 ~ 13988656 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGGAGGCTTCAGCAGGGACAGTTCCTCTGATCGTCTGATGTCTGAGATGGAGCCAACACGAGACGGTGTGGGGGATCAGGGAGAATATGGAAGCAAGGCACTTGGTCATTATGAGATGAACCCATGTGTGAAGCCTGCCACCCCCTGGTTTCAATTGGGACCCATGCCAGAGTCTGCTGCAGAGAAACAGCCCTAGAATGGGTCCTGTATGCAGAGGATGTTGGGTGATCTGGCCACGTGCACGGAATTGTTAGATGCTATCCAGCCACGGCCTGTGCTACAGAGCGACATGGAGGAAACAACCCTTATCACTTGGCCTTGAAGTCGCTGTGACTGATCTCACAGATTTATACATGCTTTCTCCTCGCTTGATCAGTCTTTTCATGTCATTCCAATTCACAGCAGTGTATCAATATATCAGTGGCAGATTTTGGCTGCACATGTTGCTGTCTCATATCTACAATAATGTGTGAGAAAGTCTCAAGAGAAACCCCACTAATTGCCGAAGACGGACATATTCTTTCACTTAGTTTCAGGACACGCCACATTTTGAAACTGCTCGCAAAATCATCTCTAAGATGCCGCTTTAGTCTGATACAAATTATGTATATGCTCTTTTTCTTAATGTACGTCGAATATAATTCATGTATGTACCTGCTGTATTTGTACAGGGGTGAGAGAGACTTTGCTGCATTGTTTTTTAGCCTGTGGGGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249355 lncRNA upstream 61469 13889301 ~ 13890916 (+) True G184128
TU249294 lncRNA upstream 478252 13468423 ~ 13474133 (+) False LOC120546706
TU249296 lncRNA upstream 484298 13458602 ~ 13468087 (+) True G184085
TU249297 lncRNA upstream 491479 13458602 ~ 13460906 (+) False G184085
TU249284 lncRNA upstream 503286 13443043 ~ 13449099 (+) True G184078
TU249492 lncRNA downstream 381468 14370124 ~ 14370768 (+) True G184235
TU249501 lncRNA downstream 433671 14422327 ~ 14424853 (+) False LOC120546619
TU249514 lncRNA downstream 487968 14476624 ~ 14565127 (+) True G184249
TU249531 lncRNA downstream 569886 14558542 ~ 14606665 (+) True G184263
TU249632 lncRNA downstream 666978 14655634 ~ 14656247 (+) True G184339
XM_039782333.1 mRNA upstream 13826 13933833 ~ 13938559 (+) True chgb
XM_039781329.1 mRNA upstream 76750 13870887 ~ 13875635 (+) True gzf1
XM_039780953.1 mRNA upstream 374969 13502644 ~ 13577416 (+) True atad2b
XM_039781816.1 mRNA upstream 478226 13468235 ~ 13474159 (+) False LOC120546706
XM_039782503.1 mRNA downstream 825 13989481 ~ 13990079 (+) True LOC120547093
XM_039781909.1 mRNA downstream 35828 14024484 ~ 14139891 (+) False LOC120546742
XM_039781907.1 mRNA downstream 35829 14024485 ~ 14140769 (+) True LOC120546742
XM_039781908.1 mRNA downstream 35829 14024485 ~ 14140769 (+) False LOC120546742
XM_039781330.1 mRNA downstream 155929 14144585 ~ 14229227 (+) True LOC120546405
TU249175 other upstream 704969 13206308 ~ 13247416 (+) False G183994
TU249176 other upstream 802307 13145475 ~ 13150078 (+) True G183994
TU249092 other upstream 943974 12990676 ~ 13008411 (+) True LOC120546167
XR_005637057.1 other upstream 3221603 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 3285913 10622736 ~ 10666472 (+) True G183540
XR_005636930.1 other downstream 35828 14024484 ~ 14121514 (+) False LOC120546742
TU249487 other downstream 373685 14362341 ~ 14381187 (+) True G184231
TU249525 other downstream 536480 14525136 ~ 14529370 (+) True G184258
XR_005636833.1 other downstream 1301018 15289674 ~ 15293252 (+) False LOC120546207
TU249798 other downstream 1313269 15301925 ~ 15318836 (+) True G184458

Expression Profile