RNA id: unassigned_transcript_1081


Basic Information

Item Value
RNA id unassigned_transcript_1081
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_27
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18932316 ~ 18932387 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGccgcggcccgggttcgattcccggtCAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251241 lncRNA upstream 111170 18819084 ~ 18821146 (+) True G185495
TU251197 lncRNA upstream 220349 18705908 ~ 18711967 (+) False LOC120547227
TU251198 lncRNA upstream 227082 18703965 ~ 18705234 (+) True G185471
XR_005636898.1 lncRNA upstream 242283 18666640 ~ 18690033 (+) True LOC120546607
TU251128 lncRNA upstream 287162 18643419 ~ 18645154 (+) True G185415
TU251367 lncRNA downstream 82339 19014726 ~ 19019533 (+) True G185589
TU251368 lncRNA downstream 90309 19022696 ~ 19023030 (+) True G185590
TU251369 lncRNA downstream 91877 19024264 ~ 19024578 (+) True G185591
TU251370 lncRNA downstream 110837 19043224 ~ 19043548 (+) True G185592
TU251371 lncRNA downstream 113027 19045414 ~ 19046107 (+) True G185593
XM_039780964.1 mRNA upstream 113873 18814609 ~ 18818443 (+) True LOC120546190
XM_039780966.1 mRNA upstream 113873 18814777 ~ 18818443 (+) False LOC120546190
XM_039780965.1 mRNA upstream 113873 18814792 ~ 18818443 (+) False LOC120546190
XM_039780967.1 mRNA upstream 113873 18814822 ~ 18818443 (+) False LOC120546190
XM_039780968.1 mRNA upstream 113873 18816155 ~ 18818443 (+) False LOC120546190
XM_039781175.1 mRNA downstream 15933 18948320 ~ 18958802 (+) True gata4
XM_039781177.1 mRNA downstream 33819 18966206 ~ 18977451 (+) False fdft1
XM_039781176.1 mRNA downstream 36537 18968924 ~ 18977451 (+) True fdft1
XM_039781178.1 mRNA downstream 45443 18977830 ~ 18981178 (+) True ctsbb
XM_039781179.1 mRNA downstream 49790 18982177 ~ 18989774 (+) True LOC120546316
XR_005637008.1 other upstream 877390 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other upstream 880245 18020963 ~ 18052071 (+) False fndc4a
TU250889 other upstream 1015068 17916853 ~ 17917248 (+) True G185237
TU250755 other upstream 1245918 17682558 ~ 17686398 (+) True G185145
TU250758 other upstream 1259430 17669172 ~ 17672886 (+) False G185145
TU251420 other downstream 271767 19204154 ~ 19208096 (+) False LOC120546624
XR_005636888.1 other downstream 497208 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other downstream 497208 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other downstream 497209 19429596 ~ 19539208 (+) False nhsl1b
TU251521 other downstream 701896 19634283 ~ 19648156 (+) False acp1