RNA id: TU260165


Basic Information

Item Value
RNA id TU260165
length 311
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G191568
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2817984 ~ 2835208 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agacacacacacacacacacacacacacacacacagacacacacacacacacagacagacagacagacacacacacacacacagacagacagacacacacacagacacacacacacacagacagacagacacacacacacacacacagacagacagacacacacacacacacacacacacacacacacatgcagacacacacacacacacacacaggcagacagacagacacacacacacacacagacagacagacacacacacacacacagacagacagacacacacacagacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260155 lncRNA upstream 77931 2738144 ~ 2740053 (+) True G191560
TU260149 lncRNA upstream 92459 2716036 ~ 2725525 (+) False G191556
TU260148 lncRNA upstream 94878 2716036 ~ 2723106 (+) True G191556
TU260147 lncRNA upstream 110053 2703198 ~ 2707931 (+) True G191555
TU260135 lncRNA upstream 117537 2697963 ~ 2700447 (+) True G191548
TU260206 lncRNA downstream 426 2835634 ~ 2895066 (+) True G191582
TU260207 lncRNA downstream 6984 2842192 ~ 2843011 (+) True G191583
TU260212 lncRNA downstream 47775 2882983 ~ 2883352 (+) True G191588
TU260182 lncRNA downstream 85210 2920418 ~ 2921724 (+) False G191571
TU260187 lncRNA downstream 85210 2920418 ~ 2921724 (+) False G191571
XM_039784452.1 mRNA upstream 154306 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 180708 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 309603 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 617527 2193300 ~ 2200457 (+) True LOC120548117
XM_039783721.1 mRNA upstream 706113 2006144 ~ 2111871 (+) False LOC120547899
XM_039784697.1 mRNA downstream 258759 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 288559 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 288559 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 288559 3123767 ~ 3137751 (+) False znf365
XM_039784298.1 mRNA downstream 338397 3173605 ~ 3176172 (+) True adob
TU260196 other upstream 39617 2775308 ~ 2778367 (+) True G191573
TU260163 other upstream 51922 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 56305 2756154 ~ 2761679 (+) True G191565
TU259649 other upstream 501749 2268828 ~ 2316235 (+) True LOC120548303
unassigned_transcript_1105 other upstream 696519 2121392 ~ 2121465 (+) True trnat-agu_15
TU260292 other downstream 258776 3093984 ~ 3095422 (+) False LOC120548437
unassigned_transcript_1108 other downstream 314606 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 315265 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1436765 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1452689 4287897 ~ 4288644 (+) True G191903

Expression Profile