RNA id: TU260168


Basic Information

Item Value
RNA id TU260168
length 388
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G191571
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2770633 ~ 3018448 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtatctgtgtgtgtgtatctgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgccggggCCAGGTTGTTGTTTATCTACCTCTCTGGCAGtctgtccatccatccttcccccccccctcctccactgTGTCTCTTCCACTCACACAGCCAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260155 lncRNA upstream 83514 2738144 ~ 2740053 (+) True G191560
TU260149 lncRNA upstream 98042 2716036 ~ 2725525 (+) False G191556
TU260148 lncRNA upstream 100461 2716036 ~ 2723106 (+) True G191556
TU260147 lncRNA upstream 115636 2703198 ~ 2707931 (+) True G191555
TU260135 lncRNA upstream 123120 2697963 ~ 2700447 (+) True G191548
TU260205 lncRNA downstream 1290 2825671 ~ 2894205 (+) True G191581
TU260180 lncRNA downstream 8340 2832721 ~ 2921724 (+) False G191571
TU260206 lncRNA downstream 11253 2835634 ~ 2895066 (+) True G191582
TU260207 lncRNA downstream 17811 2842192 ~ 2843011 (+) True G191583
TU260212 lncRNA downstream 58602 2882983 ~ 2883352 (+) True G191588
XM_039784452.1 mRNA upstream 159889 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 186291 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 315186 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 623110 2193300 ~ 2200457 (+) True LOC120548117
XM_039783721.1 mRNA upstream 711696 2006144 ~ 2111871 (+) False LOC120547899
XM_039784458.1 mRNA downstream 4678 2829059 ~ 2829748 (+) True LOC120548310
XM_039784697.1 mRNA downstream 269586 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 299386 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 299386 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 299386 3123767 ~ 3137751 (+) False znf365
TU260196 other upstream 45200 2775308 ~ 2778367 (+) True G191573
TU260163 other upstream 57505 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 61888 2756154 ~ 2761679 (+) True G191565
TU259649 other upstream 507332 2268828 ~ 2316235 (+) True LOC120548303
unassigned_transcript_1105 other upstream 702102 2121392 ~ 2121465 (+) True trnat-agu_15
TU260292 other downstream 269603 3093984 ~ 3095422 (+) False LOC120548437
unassigned_transcript_1108 other downstream 325433 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 326092 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1447592 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1463516 4287897 ~ 4288644 (+) True G191903

Expression Profile