RNA id: TU260178


Basic Information

Item Value
RNA id TU260178
length 380
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G191571
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2770633 ~ 3018448 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctctgtgtgtgtctctgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtcggttctgtgcatgtgtgtctgtgtgtgtgtgtctctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtctttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260180 lncRNA upstream 28435 2832721 ~ 2921724 (+) False G191571
TU260182 lncRNA upstream 28435 2920418 ~ 2921724 (+) False G191571
TU260187 lncRNA upstream 28435 2920418 ~ 2921724 (+) False G191571
TU260206 lncRNA upstream 55093 2835634 ~ 2895066 (+) True G191582
TU260205 lncRNA upstream 55954 2825671 ~ 2894205 (+) True G191581
TU260277 lncRNA downstream 55267 3055902 ~ 3056236 (+) True G191617
TU260265 lncRNA downstream 141422 3142057 ~ 3146849 (+) True G191610
TU260248 lncRNA downstream 163189 3163824 ~ 3276062 (+) False LOC120547552
TU260238 lncRNA downstream 195159 3195794 ~ 3258079 (+) False LOC120547552
TU260254 lncRNA downstream 210621 3211256 ~ 3258079 (+) False LOC120547552
XM_039784458.1 mRNA upstream 120411 2829059 ~ 2829748 (+) True LOC120548310
XM_039784452.1 mRNA upstream 286481 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 312883 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 441778 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 749702 2193300 ~ 2200457 (+) True LOC120548117
XM_039784697.1 mRNA downstream 93332 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 123132 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 123132 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 123132 3123767 ~ 3137751 (+) False znf365
XM_039784298.1 mRNA downstream 172970 3173605 ~ 3176172 (+) True adob
TU260181 other upstream 28435 2823364 ~ 2921724 (+) False G191571
TU260196 other upstream 171792 2775308 ~ 2778367 (+) True G191573
TU260163 other upstream 184097 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 188480 2756154 ~ 2761679 (+) True G191565
TU259649 other upstream 633924 2268828 ~ 2316235 (+) True LOC120548303
TU260292 other downstream 93349 3093984 ~ 3095422 (+) False LOC120548437
unassigned_transcript_1108 other downstream 149179 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 149838 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1271338 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1287262 4287897 ~ 4288644 (+) True G191903

Expression Profile