RNA id: TU260207


Basic Information

Item Value
RNA id TU260207
length 325
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G191583
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2842192 ~ 2843011 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctaggggagacctcacctatctacagctaggggagaccccacctatctacagctagaggagaccccacctatctacagctaggggagaccccacctatctacagctagaggagaccccacctatctacagctagaggagaccccacctatctacagctagaggagaccccacctatctacagctaggggagacctcacctatctacagctaggggagacctcacctatctacagctaggggagacctcacctatctacagctaggggagaccccacctatctacagctaggggagacctcacctatctacagctagaggagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260165 lncRNA upstream 6984 2817984 ~ 2835208 (+) True G191568
TU260183 lncRNA upstream 8959 2770633 ~ 2833233 (+) False G191571
TU260175 lncRNA upstream 17811 2823297 ~ 2824381 (+) False G191571
TU260168 lncRNA upstream 17811 2823567 ~ 2824381 (+) False G191571
TU260155 lncRNA upstream 102139 2738144 ~ 2740053 (+) True G191560
TU260212 lncRNA downstream 39972 2882983 ~ 2883352 (+) True G191588
TU260182 lncRNA downstream 77407 2920418 ~ 2921724 (+) False G191571
TU260187 lncRNA downstream 77407 2920418 ~ 2921724 (+) False G191571
TU260189 lncRNA downstream 77407 2920418 ~ 2950362 (+) False G191571
TU260178 lncRNA downstream 107148 2950159 ~ 3000635 (+) False G191571
XM_039784458.1 mRNA upstream 12444 2829059 ~ 2829748 (+) True LOC120548310
XM_039784452.1 mRNA upstream 178514 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 204916 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 333811 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 641735 2193300 ~ 2200457 (+) True LOC120548117
XM_039784697.1 mRNA downstream 250956 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 280756 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 280756 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 280756 3123767 ~ 3137751 (+) False znf365
XM_039784298.1 mRNA downstream 330594 3173605 ~ 3176172 (+) True adob
TU260196 other upstream 63825 2775308 ~ 2778367 (+) True G191573
TU260163 other upstream 76130 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 80513 2756154 ~ 2761679 (+) True G191565
TU259649 other upstream 525957 2268828 ~ 2316235 (+) True LOC120548303
unassigned_transcript_1105 other upstream 720727 2121392 ~ 2121465 (+) True trnat-agu_15
TU260292 other downstream 250973 3093984 ~ 3095422 (+) False LOC120548437
unassigned_transcript_1108 other downstream 306803 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 307462 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1428962 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1444886 4287897 ~ 4288644 (+) True G191903

Expression Profile