RNA id: TU260221


Basic Information

Item Value
RNA id TU260221
length 587
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G191595
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2964930 ~ 2965680 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctacatactactctctactgctgtctctctacatactgctctctacatactactctctactgctgtctctctacatactactctctactgttgtctctctacatactactctctactgctgtctctctacatactactctctactattgtctctctacatactactctctactgttgtctctctacatactactctctactgttgtctctctacatactactctctactgctgtctctctacatactactctctactgctgtctctctacatactactctctactgctgtctctctacatactactctctactgttgtctctctacatactactctctactgttgtctctctacatactactctctacatactactctctacatactactctctactgctgtctctctacatactactctctactgctgtctctctacatactactctctacatactactctctactgctgtctctctacatactactctctactgttgtctctctacatactgctctctactgctgtctctctacatactactctctactgctgtctctctacatactactctctactgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260218 lncRNA upstream 12312 2952230 ~ 2952618 (+) True G191594
TU260189 lncRNA upstream 14568 2920418 ~ 2950362 (+) False G191571
TU260182 lncRNA upstream 43206 2920418 ~ 2921724 (+) False G191571
TU260187 lncRNA upstream 43206 2920418 ~ 2921724 (+) False G191571
TU260212 lncRNA upstream 81578 2882983 ~ 2883352 (+) True G191588
TU260224 lncRNA downstream 5304 2970984 ~ 2976251 (+) True G191596
TU260171 lncRNA downstream 34060 2999740 ~ 3000635 (+) False G191571
TU260177 lncRNA downstream 34060 2999740 ~ 3000635 (+) False G191571
TU260179 lncRNA downstream 34060 2999740 ~ 3000635 (+) True G191571
TU260188 lncRNA downstream 34060 2999740 ~ 3000635 (+) False G191571
XM_039784458.1 mRNA upstream 135182 2829059 ~ 2829748 (+) True LOC120548310
XM_039784452.1 mRNA upstream 301252 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 327654 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 456549 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 764473 2193300 ~ 2200457 (+) True LOC120548117
XM_039784697.1 mRNA downstream 128287 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 158087 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 158087 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 158087 3123767 ~ 3137751 (+) False znf365
XM_039784298.1 mRNA downstream 207925 3173605 ~ 3176172 (+) True adob
TU260181 other upstream 43206 2823364 ~ 2921724 (+) False G191571
TU260196 other upstream 186563 2775308 ~ 2778367 (+) True G191573
TU260163 other upstream 198868 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 203251 2756154 ~ 2761679 (+) True G191565
TU259649 other upstream 648695 2268828 ~ 2316235 (+) True LOC120548303
TU260292 other downstream 128304 3093984 ~ 3095422 (+) False LOC120548437
unassigned_transcript_1108 other downstream 184134 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 184793 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1306293 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1322217 4287897 ~ 4288644 (+) True G191903

Expression Profile