RNA id: TU260243


Basic Information

Item Value
RNA id TU260243
length 1335
lncRNA type read_through
GC content 0.36
exon number 2
gene id LOC120547552
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 3163824 ~ 3339085 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgtctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaggtTGTTGCTAATAAGGACTGGTTGATATGGGCTGCAATTATACAGATTATTCTcattgtggattattttctggatgatgattagttgtttggtcctcaaatgtctaaaatgatgatcagtgtttcccaaagagcccaagatgacgtcatcAAATATCTTGTTCTGTCCACAACTCAgatcttcagtttcctgtcccagtgGAGAGAAggaactagaacaatattcacatttaacaagctgacaccTGAGAACATTGACTCAAAACAATTGCTTGATTaccaaaatagttgccgattaatttaataattgacaactaatcgattaatctttgcattTCAGCGTGCGATTCATAGAATTATGACAATCACACATGATCCAAAGAGAGGCTGCCAAATTAAAGGGTGAGATATTAATTTCCACCCAGCTCTGAAGAAGCCAAAAGACAGAGTCACCTCTGACTCATCGGTGACTCATGGGAATAATCTCTAGAAACATTTAGAGGAACTGTGTTTAAGTTTGGATGAACTCGACCAAAACGCAGAAGCACTGATTTAAACCATGGCTTTAAATACTAACTATTTTGGACTGTTCTACAtgggaaggtttttttttttttttaatctttcttCAATTAAAGAAGACATGAGTTGAATGTACATATTGTAAACATATCATATTACACATGCTGTTATGACAAGGTAAAAAGttgatgtgatttttttttttttttaagtgtatgttAAAGGTAGATGTCAAAGCATTTGGACAATCCATATACAGCATGCTACGTATGCTATGAATCAACCTGGACTATCATCTTTTTCTAAGCACtgtctagggctgcacgatatcagcaaaatgtctaattgtgattattttgactaacgTTGTGATTCAAGATATTGACGGGAATGATAATGTTTGTATCTGTATCAAACAAAGCTGgtttctgtagtctgtaggagAGGATCTGGAGTCTGGGACGTCCCTGCAGCACCACAGGACTTCATTCAGGATGGTTGGAcacattttgcctttaacaaatattgcacccTCTGCAACATTAGTCCATATTGCAATTTTGATAAAATTGTGATTGTATTATACATGGTGTGTTTTGCTTTTATTGTCGTCCTCATTTAGTCACATGTCATCTTGTTGATGAGGCAGGGATCAGGAAAAAAACCACTTGAtgccaatttttttatttattatagttCGCACCTGTGTTTTAATTTGCTGTTTATAAAATGTGCCTTATCAATAAATCTGTGACACCGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260265 lncRNA upstream 64612 3142057 ~ 3146849 (+) True G191610
TU260277 lncRNA upstream 155225 3055902 ~ 3056236 (+) True G191617
TU260191 lncRNA upstream 193013 2999740 ~ 3018448 (+) False G191571
TU260179 lncRNA upstream 210826 2999740 ~ 3000635 (+) True G191571
TU260314 lncRNA downstream 50969 3309048 ~ 3314217 (+) True G191650
TU260255 lncRNA downstream 70517 3328596 ~ 3339074 (+) False LOC120547552
TU260318 lncRNA downstream 139316 3397395 ~ 3397727 (+) True G191654
TU260320 lncRNA downstream 175267 3433346 ~ 3433604 (+) True G191656
TU260526 lncRNA downstream 365271 3623350 ~ 3624702 (+) True G191785
XM_039784298.1 mRNA upstream 35289 3173605 ~ 3176172 (+) True adob
XM_039783787.1 mRNA upstream 73710 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA upstream 73710 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA upstream 73710 3123767 ~ 3137751 (+) False znf365
XM_039784697.1 mRNA upstream 100503 3093967 ~ 3110958 (+) True LOC120548437
XM_039783654.1 mRNA downstream 2643 3260722 ~ 3268081 (+) True LOC120547879
XM_039783653.1 mRNA downstream 5419 3263498 ~ 3268081 (+) True LOC120547878
XM_039784388.1 mRNA downstream 18565 3276644 ~ 3303286 (+) True slc22a15
XM_039783048.1 mRNA downstream 48299 3306378 ~ 3308000 (+) True LOC120547573
XM_039784144.1 mRNA downstream 68074 3326153 ~ 3327050 (+) True LOC120548121
unassigned_transcript_1109 other upstream 60917 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 61575 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 116039 3093984 ~ 3095422 (+) False LOC120548437
TU260181 other upstream 289737 2823364 ~ 2921724 (+) False G191571
TU260196 other upstream 433094 2775308 ~ 2778367 (+) True G191573
TU260665 other downstream 1013894 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1029818 4287897 ~ 4288644 (+) True G191903
TU260824 other downstream 1628297 4886376 ~ 4887023 (+) True G192040
TU260911 other downstream 2762043 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 2762043 6020122 ~ 6396805 (+) False si:dkey-22n8.3

Expression Profile