RNA id: TU260277


Basic Information

Item Value
RNA id TU260277
length 293
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G191617
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 3055902 ~ 3056236 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcccagaatgcacctgaacacacctccctgtaagaccagcacgctcagaatgcacctgaacacacctccctgtaagaccagcacgctcagaatgcacctgaacacacctccctgtaagaccagcacgctcagaatgaacctgaacacacctccctgtaagaccagccccCAGAAtgaacctgaacacacctccctgtaagaccagcacgcccagaatgcacctgaacacacctccctgtaagaccagcacgcccagaatgcacctgaacacacctccctgtaagaccatgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260191 lncRNA upstream 37454 2999740 ~ 3018448 (+) False G191571
TU260178 lncRNA upstream 55267 2950159 ~ 3000635 (+) False G191571
TU260185 lncRNA upstream 55267 2950159 ~ 3000635 (+) False G191571
TU260190 lncRNA upstream 55267 2950159 ~ 3000635 (+) False G191571
TU260171 lncRNA upstream 55267 2999740 ~ 3000635 (+) False G191571
TU260265 lncRNA downstream 85821 3142057 ~ 3146849 (+) True G191610
TU260248 lncRNA downstream 107588 3163824 ~ 3276062 (+) False LOC120547552
TU260238 lncRNA downstream 139558 3195794 ~ 3258079 (+) False LOC120547552
TU260254 lncRNA downstream 155020 3211256 ~ 3258079 (+) False LOC120547552
TU260243 lncRNA downstream 155225 3211461 ~ 3258079 (+) True LOC120547552
XM_039784458.1 mRNA upstream 226154 2829059 ~ 2829748 (+) True LOC120548310
XM_039784452.1 mRNA upstream 392224 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 418626 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 547521 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 855445 2193300 ~ 2200457 (+) True LOC120548117
XM_039784697.1 mRNA downstream 37731 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 67531 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 67531 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 67531 3123767 ~ 3137751 (+) False znf365
XM_039784298.1 mRNA downstream 117369 3173605 ~ 3176172 (+) True adob
TU260181 other upstream 134178 2823364 ~ 2921724 (+) False G191571
TU260196 other upstream 277535 2775308 ~ 2778367 (+) True G191573
TU260163 other upstream 289840 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 294223 2756154 ~ 2761679 (+) True G191565
TU259649 other upstream 739667 2268828 ~ 2316235 (+) True LOC120548303
TU260292 other downstream 37748 3093984 ~ 3095422 (+) False LOC120548437
unassigned_transcript_1108 other downstream 93578 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 94237 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1215737 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1231661 4287897 ~ 4288644 (+) True G191903

Expression Profile