RNA id: TU260292


Basic Information

Item Value
RNA id TU260292
length 360
RNA type TUCP
GC content 0.56
exon number 2
gene id LOC120548437
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 3093967 ~ 3110958 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTACACCCTTTAAAGGTTCCCGGCTCAGTTGCTTCCTCATTACTGCCTCTGAGTTTGGGACCCGTGCAGCTTCACACTGTGAATCTGAATCAGGATGGACAGCAACGGCTCCGTCTCCAACGCGCTGTCCAGGATGCAGATGGCGAAGGACATGAAGGAAGAGGACAAGCTGTACAGGTACAACGGCGTGCTGTACCCGCGCCTCATGTGCCCCGAGGAAAACCTCCAGGCTCTGCAGAACATGGAGGCCAGAGAGGACGACGTCATGCTGGTGGCTTACCCCAAATGTGAACACAAAGCGCTCCCAGTGCGGTTTCCAGAGGGAGGAAAGGCGTGACATTCCTGCTGTCAGCGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260277 lncRNA upstream 37748 3055902 ~ 3056236 (+) True G191617
TU260191 lncRNA upstream 75536 2999740 ~ 3018448 (+) False G191571
TU260178 lncRNA upstream 93349 2950159 ~ 3000635 (+) False G191571
TU260185 lncRNA upstream 93349 2950159 ~ 3000635 (+) False G191571
TU260190 lncRNA upstream 93349 2950159 ~ 3000635 (+) False G191571
TU260265 lncRNA downstream 46635 3142057 ~ 3146849 (+) True G191610
TU260248 lncRNA downstream 68402 3163824 ~ 3276062 (+) False LOC120547552
TU260238 lncRNA downstream 100372 3195794 ~ 3258079 (+) False LOC120547552
TU260254 lncRNA downstream 115834 3211256 ~ 3258079 (+) False LOC120547552
TU260243 lncRNA downstream 116039 3211461 ~ 3258079 (+) True LOC120547552
XM_039784458.1 mRNA upstream 264236 2829059 ~ 2829748 (+) True LOC120548310
XM_039784452.1 mRNA upstream 430306 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 456708 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 585603 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 893527 2193300 ~ 2200457 (+) True LOC120548117
XM_039783787.1 mRNA downstream 28345 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 28345 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 28345 3123767 ~ 3137751 (+) False znf365
XM_039784298.1 mRNA downstream 78183 3173605 ~ 3176172 (+) True adob
XM_039783652.1 mRNA downstream 119822 3215244 ~ 3250866 (+) True kif11
TU260181 other upstream 172260 2823364 ~ 2921724 (+) False G191571
TU260196 other upstream 315617 2775308 ~ 2778367 (+) True G191573
TU260163 other upstream 327922 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 332305 2756154 ~ 2761679 (+) True G191565
TU259649 other upstream 777749 2268828 ~ 2316235 (+) True LOC120548303
unassigned_transcript_1108 other downstream 54392 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 55051 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1176551 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 1192475 4287897 ~ 4288644 (+) True G191903
TU260824 other downstream 1790954 4886376 ~ 4887023 (+) True G192040

Expression Profile