RNA id: TU260320


Basic Information

Item Value
RNA id TU260320
length 230
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G191656
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 3433346 ~ 3433604 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttacgtgacacgcgggacaagaacgggacagttgggtttaggtaaagaagaacgggacagttgggtttaggtaaagaagaacgggacagatgggtttaggtaaagaagaacgggacagttgggtttaggaaaagaagaacgggacagttgggtttaggtaaagaagaacgggacagttgggtttagataaagaagaacgggacagttgggtttagagaaagaagaacggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260318 lncRNA upstream 35619 3397395 ~ 3397727 (+) True G191654
TU260255 lncRNA upstream 94272 3328596 ~ 3339074 (+) False LOC120547552
TU260314 lncRNA upstream 119129 3309048 ~ 3314217 (+) True G191650
TU260238 lncRNA upstream 175267 3195794 ~ 3258079 (+) False LOC120547552
TU260526 lncRNA downstream 189746 3623350 ~ 3624702 (+) True G191785
TU260528 lncRNA downstream 193051 3626655 ~ 3626919 (+) True G191787
TU260530 lncRNA downstream 204575 3638179 ~ 3640170 (+) True G191789
TU260531 lncRNA downstream 207014 3640618 ~ 3643020 (+) True G191790
TU260534 lncRNA downstream 268988 3702592 ~ 3730541 (+) True G191793
XM_039784107.1 mRNA upstream 51255 3347038 ~ 3382091 (+) True LOC120548100
XM_039784106.1 mRNA upstream 51255 3347038 ~ 3382091 (+) False LOC120548100
XM_039783019.1 mRNA upstream 94261 3337869 ~ 3339085 (+) False LOC120547552
XM_039784144.1 mRNA upstream 106296 3326153 ~ 3327050 (+) True LOC120548121
XM_039783048.1 mRNA upstream 125346 3306378 ~ 3308000 (+) True LOC120547573
XM_039784798.1 mRNA downstream 46717 3480321 ~ 3492373 (+) True LOC120548518
XM_039784703.1 mRNA downstream 99110 3532714 ~ 3534228 (+) True LOC120548444
XM_039782933.1 mRNA downstream 114500 3548104 ~ 3561420 (+) True fgfbp3
XM_039784534.1 mRNA downstream 155621 3589225 ~ 3591796 (+) True ppp1r3ca
XM_039782936.1 mRNA downstream 379803 3813407 ~ 3827078 (+) True LOC120547503
unassigned_transcript_1109 other upstream 282802 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 283460 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 337924 3093984 ~ 3095422 (+) False LOC120548437
TU260181 other upstream 511622 2823364 ~ 2921724 (+) False G191571
TU260196 other upstream 654979 2775308 ~ 2778367 (+) True G191573
TU260665 other downstream 838369 4271973 ~ 4282720 (+) False arfgef3
TU260668 other downstream 854293 4287897 ~ 4288644 (+) True G191903
TU260824 other downstream 1452772 4886376 ~ 4887023 (+) True G192040
TU260911 other downstream 2586518 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 2586518 6020122 ~ 6396805 (+) False si:dkey-22n8.3

Expression Profile