RNA id: XM_039783761.1


Basic Information

Item Value
RNA id XM_039783761.1
length 8504
RNA type mRNA
GC content 0.59
exon number 42
gene id arfgef3
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4250605 ~ 4347579 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCTGTATTCCCGGCAATGCCAGCAGTTTAATATGAGGGATTAAAAGGACCCGGATCTGGAACCCCGCGAAGATCACAAGTATCAACCGGAACGGATTTCAAAACACGGTATAGCGCTGAGGGAATACATGACTGACGAAGATGAGAGCAGGGCGTTTTATTCATTGAATTTACCCACCGCTGGATGGGTGACAATTCATAATGAGGGTTTGTCAGATGTCAGAAGATCTTCGCTGCTGCTCCTGGAAGACAAAGCGGTGggtgtaaacaaaataaatacaaaaaatcgCTTCCTTGTTCCACCTTCGGAGGATTGGCACGTTGGCCTGACATCATTGGCTGGTCGTTGGGAATGAATCATCGCCTTCATCAGGGGGGGTCAGGGATGCTGCCACTGTCACTgcgaccttaaaaaaaaaaagacaccacCACGGACAAAACCCACACGGCGTGTCACCGTTCAACGACAATTACAAAACCTGCCAGGAGCCAGCATGGAGGAAATCCTGCGAAAGCTGCAGAAAGACGCGTCCGGCCACAAGCACAAGGCTATCCGCGATGCCTGCGTCTACGCCCGCGAAACCCTGGAGTCTCCGAATGGATCGGCCAAGATTTCCCCTTCACAGCTCCGAGAGCGCTGTCTGCTGCCTCTACAGATGGCCCTGGAGTCTAAAAACACCAAACTGGGACAGACGGCGCTTACTGGAATGCAGAAGCTCCTGTGCGAGGACCGGTTTATGGGTGGAGTCGGCGTGGAGGTGGAGGTCCTGGAGAAGCAGCTGCTCAGCCAGATGTTGGAGGCCATCCGAGTCACCCCGTCCCTCCACGAAGACCTGCAGGTGGAAGTCATGAAGGTCCTGCTGTGTATCACCTACTCCCCAAACTTTGACATTAACGGAGACTCCATCCTCCGCATCGCTGAGgtgtgtatcGAGACCTACGTGTCCAGCTGTCACCAGCGCAGCATCAACACGGCGGTCCGAGCCACGCTGAGCCAGATACTGGGAGACCTGACGCTGCAGCTACGACACAGACAAGAGGGTGCAGATGGAGAAGAAGTGACTGCTCCACCGATGCATAGAAGAGatgtgtcCCCGACCAGCCAGGCTCTGTGTGAAGACGTGGTGACGGTTCTGACAGTTTTCTGTGAAAAACTGGAGTCCGTGGACAGTGATAACCAGCTCCTGCAGCTGCTCTACCTGGAGTGCCTCCTCTCCATGCTCAGCAGCTGTCCTCCCACAATGCACCTGTCCAGAGGTTTCACCGACCTCGTGTGGAAGCAGCTGTGTCCGTCCCTCGTGGCCATCATGGGAAATCCTGTCAACGACAAAACCATCACCTCCCACCACGGCTACATGGGGGCGCCGGAGCGCCTCTCTGATAGACTCAGTCTAGGACTCAGCCACGAGGTGGACTGTTTCGGTGGGGGGGTATCCGATCAAGGCAGAGGGTCGGGCTGTTCCTCCAGCGCCCCCGCCAGGATAGCGCCGGTAGTGCGGACGGTGTGCTACGTGGCGGCGGAGCTGGTGCGCCTGGTGAGCTGCGTGGAGTCGATGAAGCCCGTGCTGCAGTCGCTCTACCACCGGATCCTGCTGTACCCGCCGCCACAGCACCGCACCGAGGCCATCCGCATCATGAAGGAGATTCTGGGCAGTCCCCAGCGGCTGTACGACCTGGCCGGTCCGTGCGTGGTGGAGCCTGAAACCAGGAAGCGCTCCTTCTCCAAGAGGAAGTCCCACCTGGACCTGCTCAAACTAGTGATGGACGGGATGACCGAGGCCTGTATGAAGGGAGGCATCGAGGCGTGTTACTCCTCGGTGTCCTGCGCCTGCGCTCTCCTCGGGGCGCTGGACGAACTGTCGAAGGGCCGTGGCATCCAATCCGAGCAGGCTCGGCTTCTGCTCCGGCGACTGGACGACCTGAAAGATGGGACCGAGTCGACGCGCGAGTCCATGGAGATCAACGAGGCCGACTTCAGGTGGCAGAGACACGTCCTGTCCTCTGAGCAGGCTCCCTGGGACCctgcctccacctcctccaACGCCGCGGCCGCCGCAGCCGCCGAGCGCAGCCCCGACGTCAGCATCAGCATCACCACGGAGACGGGCCAAACCACCGTGGACGTGGAGGTGGGCGAGATCGGCGCGGATCTGGGCCAAGCCACTCCCGAGGAGTGTGGCGAGGACGCGCGCCTCCCCTCGTCCTCCGTCTGCGGCGGCCGGGAGGGGGCCGAGCGCGAaggagagagaggagcggTGGTTCCTCCAGACGTGGTGCAGCGAAGTCACGGCCTCGTCTACCCCGACATCACCAACTTCCTGTCTGTGGAGTCCCGAACCAGGCCGCACCACGGAGGGGGGTCACGGTACAGCGAGAGCAACTTTagCATGGAGGAGCAGGACTTGTCCCGGACCGAGTTTGACTCGTGTGACCAGTACTCCATGGCCGCCGAGAAGGACTCGGGCCGCTCCGACGTGTCCGACATCGGCTCCGACAACGCCTCGCTGGCCGACGAGGAGCAGCAGACGCCTCGCAACTGCCCGGGCCACCGCTCGCTGCGCACCGCCGCGCTGTCCCTCAAACTGCTGCGCAACCAGGAGGCGGACCAGCAGAGCGCCCGGCTGTTCGTCCAGGCGCTCGCGGCGCTGCTGCCCCGGCTGCTGGGACTGGCCACGGCCGCCGAGGTGGACCTGTCGCTGCAGAACTTCTCCTCCACCTTCTGCTCCGGTCTGCAGGCcgGTGGGATCCACTCTCCGGGCTTCGAGAGCGGCGACACGCTGAGCTGTCAGTCTCTGATGAACGCCGACGGCCTCTACCTGGTGTCCTACTACGCCCTCCTGCTCAATCTCAAGCTCTGCTGCTGCGACTTCTACAGGCGCCGGACGCTCGCGCCCGTCCTCAGCCTGaagGAGTTTGTGCGTCTGATCCAGAGCAGCGGGGTCCTTGTGGTTCTGTCTCAGGCCTGGATCGAGGAGCTCTACCACCAGGTGTTAGAGCGCAACCTGCTGGCCGAGGCCGGGTACTGGGGCTCGCCAGAAGACCACACACTGCCACTCATCACCATgctcacagaTATTGACGGGCTGGGCAGCAGTGCGATCGGAGGCCAGCTGATCAGGAGGGCGTCCAGCCAATCACCGCTCAGCTGTGGCAAGGCTGGCAGTGACACTGCGATGGCAGgagCAGTGTTCTCCCGCTTCATCCTCACCGGCGTGTGGAAGAACCTGATGGACGTGCTGTCCACGCCGCTGACGGGCCGCATGGCGGGCAGCTCCAAGGGCCTGGCGTTTATCCTGGGAGCGGAGGGGGTCAAAGAGCAGagccagagggagagagacaccaTCTGTCTGAGTCTGGACGGCCTGCGCAAAGCGGCTGCGCTCAGCTGCGCCCTCGgtGTGGCTGCCAACTGTGCCTCGGCGTTGGCCCAGATGGCTGCAGCCTCCTGTGTgcaggaagagaaagaggagaaggaggcggGAGAGATGGGCGACGCCATCACACAAGtaAAGCAGCGCGTTGAACAGCGTCTGGAGCAGATGGGTCGTCCTCAGGGAGTTCGCCTCCACACGGCTCACGTGCTGTGTATGGACGCCATCCTGAACGTAGGACTGGAGATGGGTAGCCATAATCACGACTGCTGGCCGCATGTtttcagGGTGACTGAGTACATCAGCTCGTTGGAGCACAGCCACTTCAGCGACGGCTCGGCCCAGCCGTCCTCTCTGACCCCCATCAGCCAGCAGAGCCAGCAGGCCGCCGGCGTGGACCTGGGCATGGAGCTGAGCTGCGAGCCCAGCCCGGAGGCCTCGGAGCTGGGCCTGAGCCAGCCCGTCATCCAGCCTCTGTCCATCCAGGAGCTGCTGAGGGAGAGCAGCCGGGGCCGAGGGCTGGAGCTGAAGAGCGGCAGCCTGATGACGGGGAACAGCGCTGCCAAGGCTGTGTGCACGCTGTCAACACAGACTGACAGgttGTTTGAAGAAGCAGCTACCAAGCTGAACCTGGTTGGTCTGGTCGGCTTCCTGCAGCAGCTCCGGAAAGCTTCTCAGTCTCAGCTGTTTGACTCCGTTACTGAGACTGGAGACTATTCACTGGCAATgccagGCGAGGCCAAGTCGACGCTGGACCGACGCAGCGCTCTGCATCTCTTCCGCCTGGGCGAGGGCATGCTGAGGATCGTCATGAACAAGAACCGCCCTCTGCTGCACATGATGAGGGCCTGGAGCGTGGTGGCCCCACACCTGGTCGAGGCGGCGTGTCACAAGGAGCGCCACGTGTCCCAGAAGGCCGTTTCCTTCATCCACGACGTTCTGACGGAGGTGCTGACGAGCTGGGCGGAGCTTCCACACTTCCACTTCAACGAGGCGCTGTTCAGGCCCTTCGAGCACATCATGCAGCTGGAGCTGTGTGACGAGGACGTACAGGACCAGGTGATAACGTCCATAGGAGAGCTGGTGGAGATGTGTTCTCCTCAGATCCTGTCAGGGTGGAGGCCTCTGTTCAGCGCCCTGAGGACCGTCCACAGCAGCAAGACAGACACCAAAGACTACCTGCTGGGAGAATACTCCATGGGGAAGTCCCAGGCTCCAGTGTTCGATGTCTTCGAGGCTTTCATCAACACCGATAACATCCAGGTGTTTGCCAACGCGGCCACTGACTACATCATGTGCCTCCTGAAGTTTGTCAAAGGCTTAGgagaggTGGACTATAAGGAGATCGGAGACTGTGTCCATGTGTCGGGTTACAGCTCCACCGacctctgcctgcctgctctggACTATCTCCGCAGATGTTCGCAGctgctgGCAAAGATCTACAAGATGCAGTCCAAGCCGGTGTTCCTGGGGGCGCGGCTCGCCAGCCTGCCCCTGAGATCGCAGGAGCGCTCGATCAGCACCGAGGACGGGATGGACTGCGTCCTGCAGGAGTTTGACGACGACACGGGTCTGATCCAGGTGTGGATTTTGTTGCTGGAGCAGCTCACAGCAGCGGTGTCCAACTGTCCCCGCCAACACCAACCTCCAACCCTGGAGCTGCTCTTCACTCTGCTCAGAGAGGTCGCCACTGTGCCAGgCCCGGGGTTCGCCATCTTCGCCGTCATCCAGCTGCTGCTTCCCGTGATGTCCCTGTGGCTGCAGCGTAGCCACGGCGACCACTCCTACTGGGACGTGGCGGCCGCAAACTTCAAGCACGCCATCGGCCTGTGCTGCGAGCTGGTGGTGGAGCACGTCAACAGTTTCATACACTCGGATATTGGTTACGAGTCTTTGATCAACCTGATGTTGAAGGATCTGTTCAAGCTTCTGGTGGCTTGTGTGTCTGAGCCTGCAGAGACCATCTCCAGAGTGGGCTGCTCCTGCATCAGGTATATTTTGGTCACAGTGGGTCCAGTGTTCACGGAAGAAATGTGGCGGTTGGCCTGCTGTGCTCTGCAGGATGCTTTCTCTGCTACGCTAGAGCCTgtcaagaaCCTTCTGGCGTGTTTCCACAGCGGTTCAGACAGTTTTTCGGGAGACGCCTGTGAAGTGAAGGTGGCCGCTCCGTCccactctgctgcagctgaggcGGAGTACTGGCGGATCAAAGCCATGGCTCAGCAGGTCTTTATGTTGGACACCCAGTGCTCGCCGAAGACGCCCAACAACAAGGAGGGCTTTGAGCACGCTCAGTCCTGCGTTCTCATCATCGAGCTGCCGACAGACCAGCAGGCCAacggacacacacagaagagGATCCCCTTCAGGACCATCGTGGTGAGCCTGCTGTCCCACCAGGTCCTGCTCCAAAACCTCTACGACATCCTGCTGGAGGAGTTCGTCAAGCATCCCGACGGAACCGAAAGCGTCACCCCCGTGACCTCTGACCCCAGCCGGGCCGCTGCAGGCTTCCTGCGCTACATCTCCATGACTAACTTAGCCATAATCCTTGATCTGCTGCTGGACTCTTACAGGACAGCGCGGGACTTTGACACCCGGCCCGGTCTGAAGTACCTACTGATGAAGGTGTCGGGGGTTTCTGGCGCGGCTAATCTGTACCGTCAGTCCGCCATGAGCTTCAACCTGTACTTCCAGGCCCTGCTGTGCGCCACACTGAGCCAGGCCGACAGCATGACCGCACAGCAGGTGAAGAGGATGCTGTATGAGGAAGAAGAGGGGAGCTCTGACTCTTCTCACCCTGGCTCTGCTTCCTCAGAGGACGAAGACATCTTTGAAGAAACAGCACAGGTCAGCCCCCCCCGCGGCCGGGATAAGCGCCACCACTGGCGGGCGCCCATCCCGTCCCTGAGCGTGCAGCCGCTGAGCAGCGCGGACTGGGCCTGGCTGGTCAAACGCCTCTACAAGCTGTGCATGGATCTGTGCAACAGCTACATTCAGATGCACCGCGACCTGGAGAGCACGCTGGAGGACATGGCGCTGCTGAGGGGAGGAGCGGGAGGCGCGGGAGAGCACGTCTTCTTCCTGCCCCTCTTCCAGTCGGAGACTTCCACCCCGACTTCGGCGGGCGGGCTGTCGGCGCAGGGGACGCCGTCGGAGGAAGGCGGGTACAGGGGTCAGGCGGCGGACAGGGCAGCGTCGCCGGGAGACACGCCCACACCCAGCCCAGGATTCAGCTGCACGGGCAGTCTGCCCCCCCACTTCAGGTCCGGAGGCGAGAGGAGGGACTCCGGCCTCGCAGGAAGCTCTGCAGGCGCAGCTCCTGTCAGCGCCGGCCCGGGAAGGAGAAAGGAATGGTGGGAAAGCGCCGGGAACAAGCTGTACACCATCGCCACGGACAAAACCATCAGCAAGCTGATGATGGAGTACAAACGccggaagcagcagcagcagcagcaggcgcAGCAGAGCCACGTCAACCTGTTTATGAAGGAGCAGGGCCGTGCGGCTGGGgctgcagcaggaggaggaggtgcgGGCGGGGAGAGGAGGGGCCCCGTGGAGCCACAAAGGGCCCCGCAGAGGCCCCAACATCTGGTGGACCAGCAGGGTCCCGCTCTGAGGCACTCTGTCAGCGCGGGGCCGGAGGTCCTGAGGCAGGAGAAGAGACCTCGGTCAGCATCCACCATCAGCTCCCACAGCATCTCGCTGAGGGACTCGGAGGCTCAGATACAGGCGTGGACCAACATGGTCTTGACTCTCCTGAACCAGGTCCTCCTGCTGTCAGATTCCTCCTTCCTGGCGCTCCAGCCGGCGCTCTACCCCTGCCTCAGCCAGCTGTCCTGCCACGCGGATTCACGCCGCCCCGCGCAGGCGTTGCGCGAGTGGCTGGGCCGCGTCGGCAGGCTCTACGACATCATCGTGGGACGCCGCAGCGGagaaacgcaaaaaaaaaacaccgggCGGAAGAGCGGCGGTCTGTCGGGTCAGTGAAGGACGTAAAACAGATGAAGTGGACTGGTTTGATGCCGTCCGTGCGACGGCGCCGCTGTGCGGTAGATTGGAAAAGGGTTTGATTGGCTGATGATGGCAACGCAAAGGCAGACTGTGACATCATAATCCCAATACAAGTGGTGGAACAagtgacgataaaaaaaaaaaaaaatggattcgTGGCATTTTTGAAGAACACTGGCGAACATGGTTCTTTGTCTATAATAGAAATGCTTTTGAGAAGTGAATGTGCCCAGTTCTGCCTCTTTTTGTTCAGTTGAAGTTGTTCattttacacatacacacacacacacacacacacacacacacacacacacacacacacacgaagctTTTAATATGATTTGCTTATTAGTTTGAAAAACTGATTTGCAGAATTGCTCCTAATCTTGTCACAGTATTGTCATATCGCCACAATATGCTTCCACTAAGCTCATAAATACGTAATTACATTAATGTGGATGCAGACAcaaagcttgatttatggtttTGCGTTGAATCTACGCCGTAGATACGTACCTACATAGGTGCGTACGTAGGTAGGCGTATTAGGGATGTCACATGAACTGGTACTTTGGTACCAAGTCGGTACCCCTCCTCTCCAcgacaaaacagtgacagaaattTAAGAGGAAAAAGACCCCCTAAGTGTTATCCTTGTTCTCCTAAAATACGCGTTACCTGTATAATGGAGGACGTGGGacttattgtattgtattttaccGTGGTATCGAATTGGAAATTAAAAATCATGAAATTTCACTGGTATTGGTATcgatgactttttttattctttttctctttttacacACCGTGGTATGGACGGTGTTATCGAGTATCGTGTACTTTTGGTGGTAACGGTACCCACTACTACATTTTTGGTAGTCTATATATTTGAACGTACACGTacgacgattctgattggtttaaagaaatgccaataaaccagaacaggTTTTTCTCCcgtcccggaatgctgtgtggactagccagaccctcctccgcaacgctgtggaggaaggtccggcaaagcgagactacattgTTGGTATCGTGACATCCCTAATGCGTAGAGACGGACCCTACACCGTAGCCCGACGCGCACCTTCCCCAGA

Function

GO: NA

KEGG:

id description
K17572 ARFGEF3, KEPI; brefeldin A-inhibited guanine nucleotide-exchange protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260648 lncRNA upstream 33552 4216818 ~ 4217053 (+) True G191890
TU260645 lncRNA upstream 63948 4186404 ~ 4186657 (+) True G191887
TU260643 lncRNA upstream 72475 4177835 ~ 4178130 (+) True G191885
XR_005637169.1 lncRNA upstream 250419 3994791 ~ 4000186 (+) True LOC120548325
TU260583 lncRNA upstream 255200 3914559 ~ 3995405 (+) False LOC120548325
TU260674 lncRNA downstream 4337 4348505 ~ 4349642 (+) True G191909
TU260675 lncRNA downstream 4337 4348505 ~ 4416287 (+) False G191909
TU260678 lncRNA downstream 23507 4367675 ~ 4367976 (+) False LOC120548449
TU260684 lncRNA downstream 40062 4384230 ~ 4423807 (+) True G191918
XR_005637121.1 lncRNA downstream 263974 4608142 ~ 4609045 (+) True LOC120547946
XM_039784706.1 mRNA upstream 186106 4007726 ~ 4064499 (+) True LOC120548448
XM_039784225.1 mRNA upstream 404930 3832586 ~ 3845675 (+) True LOC120548162
XM_039782936.1 mRNA upstream 423527 3813407 ~ 3827078 (+) True LOC120547503
XM_039784534.1 mRNA upstream 658809 3589225 ~ 3591796 (+) True ppp1r3ca
XM_039782933.1 mRNA upstream 689185 3548104 ~ 3561420 (+) True fgfbp3
XM_039783152.1 mRNA downstream 6436 4350604 ~ 4352975 (+) True LOC120547632
XM_039783153.1 mRNA downstream 6447 4350615 ~ 4352966 (+) False LOC120547632
XM_039784708.1 mRNA downstream 22983 4367151 ~ 4368326 (+) True LOC120548449
XM_039784709.1 mRNA downstream 34037 4378205 ~ 4382442 (+) True LOC120548450
XM_039784284.1 mRNA downstream 39970 4384138 ~ 4389785 (+) True LOC120548201
unassigned_transcript_1109 other upstream 1100061 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 1100719 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 1155183 3093984 ~ 3095422 (+) False LOC120548437
TU260181 other upstream 1328881 2823364 ~ 2921724 (+) False G191571
TU260196 other upstream 1472238 2775308 ~ 2778367 (+) True G191573
TU260824 other downstream 542208 4886376 ~ 4887023 (+) True G192040
TU260911 other downstream 1675954 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 1675954 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 1980347 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 1980347 6324515 ~ 6360991 (+) False itsn1

Expression Profile