RNA id: TU260668


Basic Information

Item Value
RNA id TU260668
length 566
RNA type TUCP
GC content 0.48
exon number 2
gene id G191903
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4287897 ~ 4288644 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctgtctctgtgtgtatgtttgtgtgtgtgtgtgtgtgtctgtatggctctgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctgtgcgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctctgtgtgtgtgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgttgttgtgtgtgtgtgtgtctctgtctgtctgtctctgtgtgtatgtttgtgtgtgtgtgtgtgtgtctgtatggctctgtgtgtctgtgtgtgtgtgtctgtttgtctctgtctgatgtctctgtgtgtgtgtgtgtctgtatgtctctgtttgtgtctgtatgtctctctgtctgtatgtctctgtgtgtgtgtgtgtctcttgtgtgtgtgtgtgtgtgtatgtctctctgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260648 lncRNA upstream 70844 4216818 ~ 4217053 (+) True G191890
TU260645 lncRNA upstream 101240 4186404 ~ 4186657 (+) True G191887
TU260643 lncRNA upstream 109767 4177835 ~ 4178130 (+) True G191885
XR_005637169.1 lncRNA upstream 287711 3994791 ~ 4000186 (+) True LOC120548325
TU260583 lncRNA upstream 292492 3914559 ~ 3995405 (+) False LOC120548325
TU260670 lncRNA downstream 54507 4343151 ~ 4347579 (+) False arfgef3
TU260674 lncRNA downstream 59861 4348505 ~ 4349642 (+) True G191909
TU260675 lncRNA downstream 59861 4348505 ~ 4416287 (+) False G191909
TU260678 lncRNA downstream 79031 4367675 ~ 4367976 (+) False LOC120548449
TU260684 lncRNA downstream 95586 4384230 ~ 4423807 (+) True G191918
XM_039784706.1 mRNA upstream 223398 4007726 ~ 4064499 (+) True LOC120548448
XM_039784225.1 mRNA upstream 442222 3832586 ~ 3845675 (+) True LOC120548162
XM_039782936.1 mRNA upstream 460819 3813407 ~ 3827078 (+) True LOC120547503
XM_039784534.1 mRNA upstream 696101 3589225 ~ 3591796 (+) True ppp1r3ca
XM_039782933.1 mRNA upstream 726477 3548104 ~ 3561420 (+) True fgfbp3
XM_039783152.1 mRNA downstream 61960 4350604 ~ 4352975 (+) True LOC120547632
XM_039783153.1 mRNA downstream 61971 4350615 ~ 4352966 (+) False LOC120547632
XM_039784708.1 mRNA downstream 78507 4367151 ~ 4368326 (+) True LOC120548449
XM_039784709.1 mRNA downstream 89561 4378205 ~ 4382442 (+) True LOC120548450
XM_039784284.1 mRNA downstream 95494 4384138 ~ 4389785 (+) True LOC120548201
TU260665 other upstream 5177 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 1137353 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 1138011 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 1192475 3093984 ~ 3095422 (+) False LOC120548437
TU260181 other upstream 1366173 2823364 ~ 2921724 (+) False G191571
TU260824 other downstream 597732 4886376 ~ 4887023 (+) True G192040
TU260911 other downstream 1731478 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 1731478 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 2035871 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 2035871 6324515 ~ 6360991 (+) False itsn1

Expression Profile