RNA id: TU260821


Basic Information

Item Value
RNA id TU260821
length 312
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G192037
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4883792 ~ 4884103 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcatttataatctggaactaagaaatgcaaggcggtcctttttctctgacattatcgccagaaacaataataattcacgtgctttgtttgctactgtcgatagattaactaaccctccagtaccagtagcatctgaactgttgtctaccaaggcttgcaatgattttgcctccttcttcacagacaaaattcagaaaattagacaaacagtcagtgcttccatatcaagtacacgatatgtgttgtcacagtgtgcacgcaaaacaaattccaacatgacacaatttcatacgatcaaccttaaaaacctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260819 lncRNA upstream 137 4883170 ~ 4883655 (+) True G192035
TU260756 lncRNA upstream 53691 4829619 ~ 4830101 (+) True G191981
TU260737 lncRNA upstream 110014 4726574 ~ 4773778 (+) True G191962
TU260731 lncRNA upstream 123378 4722707 ~ 4760414 (+) True G191960
TU260710 lncRNA upstream 205444 4629057 ~ 4678348 (+) True LOC120548511
TU260823 lncRNA downstream 1870 4885973 ~ 4886225 (+) True G192039
TU260834 lncRNA downstream 341474 5225577 ~ 5248686 (+) False atrnl1a
TU260904 lncRNA downstream 958430 5842533 ~ 5842887 (+) True G192103
TU260901 lncRNA downstream 1165295 6049398 ~ 6190842 (+) True G192100
TU260932 lncRNA downstream 1384294 6268397 ~ 6287371 (+) True G192123
XM_039784789.1 mRNA upstream 247267 4629151 ~ 4636525 (+) False LOC120548511
XM_039783773.1 mRNA upstream 267831 4613923 ~ 4615961 (+) True LOC120547947
XM_039783774.1 mRNA upstream 267831 4614701 ~ 4615961 (+) False LOC120547947
XM_039783775.1 mRNA upstream 268060 4613923 ~ 4615732 (+) False LOC120547947
XM_039783771.1 mRNA upstream 305431 4575583 ~ 4578361 (+) True LOC120547943
XM_039784008.1 mRNA downstream 19619 4903722 ~ 5248736 (+) True atrnl1a
XM_039784009.1 mRNA downstream 19619 4903722 ~ 5248736 (+) False atrnl1a
XM_039784010.1 mRNA downstream 19619 4903722 ~ 5248736 (+) False atrnl1a
XM_039784011.1 mRNA downstream 19619 4903722 ~ 4973557 (+) False atrnl1a
XM_039783925.1 mRNA downstream 506316 5390419 ~ 5427836 (+) True ccdc172
TU260668 other upstream 595148 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 601072 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 1733248 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 1733906 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 1788370 3093984 ~ 3095422 (+) False LOC120548437
TU260824 other downstream 2273 4886376 ~ 4887023 (+) True G192040
TU260911 other downstream 1136019 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 1136019 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 1440412 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 1440412 6324515 ~ 6360991 (+) False itsn1

Expression Profile