RNA id: TU260823


Basic Information

Item Value
RNA id TU260823
length 253
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G192039
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4885973 ~ 4886225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttccacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgctttacacggacctctgagactatcacagagcaggtgcatttatacggagacttgattacacacagctggattctatttatcatcattagtcatttaggtcaacattggattattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260821 lncRNA upstream 1870 4883792 ~ 4884103 (+) True G192037
TU260819 lncRNA upstream 2318 4883170 ~ 4883655 (+) True G192035
TU260756 lncRNA upstream 55872 4829619 ~ 4830101 (+) True G191981
TU260737 lncRNA upstream 112195 4726574 ~ 4773778 (+) True G191962
TU260731 lncRNA upstream 125559 4722707 ~ 4760414 (+) True G191960
TU260834 lncRNA downstream 339352 5225577 ~ 5248686 (+) False atrnl1a
TU260904 lncRNA downstream 956308 5842533 ~ 5842887 (+) True G192103
TU260901 lncRNA downstream 1163173 6049398 ~ 6190842 (+) True G192100
TU260932 lncRNA downstream 1382172 6268397 ~ 6287371 (+) True G192123
TU260938 lncRNA downstream 1386697 6272922 ~ 6290271 (+) True G192125
XM_039784789.1 mRNA upstream 249448 4629151 ~ 4636525 (+) False LOC120548511
XM_039783773.1 mRNA upstream 270012 4613923 ~ 4615961 (+) True LOC120547947
XM_039783774.1 mRNA upstream 270012 4614701 ~ 4615961 (+) False LOC120547947
XM_039783775.1 mRNA upstream 270241 4613923 ~ 4615732 (+) False LOC120547947
XM_039783771.1 mRNA upstream 307612 4575583 ~ 4578361 (+) True LOC120547943
XM_039784008.1 mRNA downstream 17497 4903722 ~ 5248736 (+) True atrnl1a
XM_039784009.1 mRNA downstream 17497 4903722 ~ 5248736 (+) False atrnl1a
XM_039784010.1 mRNA downstream 17497 4903722 ~ 5248736 (+) False atrnl1a
XM_039784011.1 mRNA downstream 17497 4903722 ~ 4973557 (+) False atrnl1a
XM_039783925.1 mRNA downstream 504194 5390419 ~ 5427836 (+) True ccdc172
TU260668 other upstream 597329 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 603253 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 1735429 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 1736087 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 1790551 3093984 ~ 3095422 (+) False LOC120548437
TU260824 other downstream 151 4886376 ~ 4887023 (+) True G192040
TU260911 other downstream 1133897 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 1133897 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 1438290 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 1438290 6324515 ~ 6360991 (+) False itsn1

Expression Profile