RNA id: TU260824


Basic Information

Item Value
RNA id TU260824
length 648
RNA type TUCP
GC content 0.39
exon number 1
gene id G192040
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4886376 ~ 4887023 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acgttcaagggggccgaatactttcgcaaggcactgtaagttaccatagttatgcggatgacacccaaatttacataaccttatcgccagggaactatatcccaatacaacaattaaatatgtgcattgaacagattaatgattggatgtgccagaactttcttaaattaaatgaagaaaaaacggaggtggttgtttttggagcaaaagaggaacgattgaaagtcagcgctaagcttcaaacgacaatgttgaaaacaacagacaaagccagaaatcttggtgtagtcatggactcagacctgaattttaaaagccacattaacataataaaaaaatcagcctattatcaccttaaaaatatatcaagggttaaaggacttatgtctcagcaggatctggaaaaacttgtccatgcttttgtcttcagtagacttgactactgtaacggtgtctttacaggtctccccaaaaaatcaatcagacagctgcagctgattcagaacgctgctgctcgagtcctcactaagaccaagaaagtggatcacatcactccagtactgaagtctctacactggcttccagtgcctcaaagaattgatttcaaaatacttttactggtttataaatcactaaacggtttagggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260823 lncRNA upstream 151 4885973 ~ 4886225 (+) True G192039
TU260821 lncRNA upstream 2273 4883792 ~ 4884103 (+) True G192037
TU260819 lncRNA upstream 2721 4883170 ~ 4883655 (+) True G192035
TU260756 lncRNA upstream 56275 4829619 ~ 4830101 (+) True G191981
TU260737 lncRNA upstream 112598 4726574 ~ 4773778 (+) True G191962
TU260834 lncRNA downstream 338554 5225577 ~ 5248686 (+) False atrnl1a
TU260904 lncRNA downstream 955510 5842533 ~ 5842887 (+) True G192103
TU260901 lncRNA downstream 1162375 6049398 ~ 6190842 (+) True G192100
TU260932 lncRNA downstream 1381374 6268397 ~ 6287371 (+) True G192123
TU260938 lncRNA downstream 1385899 6272922 ~ 6290271 (+) True G192125
XM_039784789.1 mRNA upstream 249851 4629151 ~ 4636525 (+) False LOC120548511
XM_039783773.1 mRNA upstream 270415 4613923 ~ 4615961 (+) True LOC120547947
XM_039783774.1 mRNA upstream 270415 4614701 ~ 4615961 (+) False LOC120547947
XM_039783775.1 mRNA upstream 270644 4613923 ~ 4615732 (+) False LOC120547947
XM_039784721.1 mRNA upstream 285110 4503362 ~ 4601266 (+) True LOC120548456
XM_039784008.1 mRNA downstream 16699 4903722 ~ 5248736 (+) True atrnl1a
XM_039784009.1 mRNA downstream 16699 4903722 ~ 5248736 (+) False atrnl1a
XM_039784010.1 mRNA downstream 16699 4903722 ~ 5248736 (+) False atrnl1a
XM_039784011.1 mRNA downstream 16699 4903722 ~ 4973557 (+) False atrnl1a
XM_039783925.1 mRNA downstream 503396 5390419 ~ 5427836 (+) True ccdc172
TU260668 other upstream 597732 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 603656 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 1735832 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 1736490 3149814 ~ 3149886 (+) True trnar-acg_20
TU260292 other upstream 1790954 3093984 ~ 3095422 (+) False LOC120548437
TU260911 other downstream 1133099 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 1133099 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 1437492 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 1437492 6324515 ~ 6360991 (+) False itsn1
TU261063 other downstream 1598608 6485631 ~ 6505819 (+) False LOC120548025

Expression Profile