RNA id: TU260834


Basic Information

Item Value
RNA id TU260834
length 714
lncRNA type sense_over
GC content 0.41
exon number 2
gene id atrnl1a
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4903722 ~ 5248736 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggggggttgtATTGATTGTGTTCTCAGGATGTCAATAGGGTCAAATGACAAGCTCAGCCAACACTATAGACTACATATAGTTACATACATACTGGCTCAGCAACctaaatggacacacacacaatgggaaGGCACTGAGCACAGCATGACTTGAAATACGCttaatacatacaaattacacaACATCTCAACAGTCACACTTTTGTATAGACTAATTATTAACACTTGATGCACCATTCGCAATTACATTAGTTAACTTGTATACGCCGTATATGCCTTGCAGCTTTGTTCGACATCTTACTAAACCTAAGAATGGCACAACTCACAAGTCTGTCAGTTCTGGACCACAACCTGATGTCATAACAGTTACTGGAAAGAGTGACCACTAAAGACTCTAGTGCTCTCCTGACCTGTGGAATACAACCATCAGCCAAAATGCTTCATTGACCAAGACTTTGATCCATggaaaaacaattaatttaCACTCCAGAACAGTAACAGCTAGATTCCCATGAACGGTGCTGTGGATATCATGGGTCCCTAGAGTAACCCTGTCACCTTTCTAACAAAATGTGACACGCGAATGTCCAATGGATGTGGCCgtgctcttctctctcctctctgttgcTATTACTTACCAACAAGAACAGCATAGTTTAAAAGTGTATATATGTTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260823 lncRNA upstream 339352 4885973 ~ 4886225 (+) True G192039
TU260821 lncRNA upstream 341474 4883792 ~ 4884103 (+) True G192037
TU260819 lncRNA upstream 341922 4883170 ~ 4883655 (+) True G192035
TU260756 lncRNA upstream 395476 4829619 ~ 4830101 (+) True G191981
TU260737 lncRNA upstream 451799 4726574 ~ 4773778 (+) True G191962
TU260904 lncRNA downstream 593847 5842533 ~ 5842887 (+) True G192103
TU260901 lncRNA downstream 800712 6049398 ~ 6190842 (+) True G192100
TU260932 lncRNA downstream 1019711 6268397 ~ 6287371 (+) True G192123
TU260938 lncRNA downstream 1024236 6272922 ~ 6290271 (+) True G192125
TU260973 lncRNA downstream 1062710 6311396 ~ 6315101 (+) True G192143
XM_039784011.1 mRNA upstream 252020 4903722 ~ 4973557 (+) False atrnl1a
XM_039784789.1 mRNA upstream 589052 4629151 ~ 4636525 (+) False LOC120548511
XM_039783773.1 mRNA upstream 609616 4613923 ~ 4615961 (+) True LOC120547947
XM_039783774.1 mRNA upstream 609616 4614701 ~ 4615961 (+) False LOC120547947
XM_039783775.1 mRNA upstream 609845 4613923 ~ 4615732 (+) False LOC120547947
XM_039783925.1 mRNA downstream 141733 5390419 ~ 5427836 (+) True ccdc172
XM_039783928.1 mRNA downstream 141733 5390419 ~ 5427836 (+) False ccdc172
XM_039783930.1 mRNA downstream 141733 5390419 ~ 5414448 (+) False ccdc172
XM_039783924.1 mRNA downstream 141733 5390419 ~ 5414362 (+) False ccdc172
XM_039783927.1 mRNA downstream 141733 5390419 ~ 5414352 (+) False ccdc172
TU260824 other upstream 338554 4886376 ~ 4887023 (+) True G192040
TU260668 other upstream 936933 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 942857 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 2075033 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 2075691 3149814 ~ 3149886 (+) True trnar-acg_20
TU260911 other downstream 771436 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 771436 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 1075829 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 1075829 6324515 ~ 6360991 (+) False itsn1
TU261063 other downstream 1236945 6485631 ~ 6505819 (+) False LOC120548025

Expression Profile