RNA id: XM_039784011.1


Basic Information

Item Value
RNA id XM_039784011.1
length 2357
RNA type mRNA
GC content 0.54
exon number 10
gene id atrnl1a
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 4903722 ~ 5248736 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGACAGCGGTAGCAGACGgagcacagagagacagagagaaaaggagaagcTGCGACTGTCGCATCCTGAGataagagagcagagagagagagaagcagaagAGGGCAGCACGTCTTTGTCTGGGAGCACAGCCAGCAGGAGagcacatcatcatcatcatcatcatcggaGCTCCGTTGGGTTTTTTCATTTCATCTCCGGGGGATTACAGTCTCTGAGGCGGAGGCAGCAATCATCCGGTCACGGTGTTTACATCCCGAACCTTGCCTACACAGTGGAAGTTCTCTGGAAGACCTGTGGGGACGCGCTGCCGAGCGCGTAACGGCGCTTTTCCATGTTGGTGTTGCTCAGAAACGGATGGGTCCGATTGGAATTGCGTTTACATTGTTTCTTTTAAGGTCGGAACTGCATGTTTTcataaaagttatttttttatatatatatatatatatatatatatatatatatatcttatatatatctGTCCCGCAGCTTTGCTCCGCATCGCTCAGCATGTTCGGATAGTGCGTAATTATTGTTTTCCTGGGCCTTTTACCCACCGGCGTCACAGGTAGGGTACTTTATATATCTAGGCTACACCACCGCTGATGACAACACATTACCACGCAGAGTGAAAGGTGACAGCTCGTGTTCTGGTCCCGGGCTGCagcctctttaaaaaaaaagaaaaagaaaagaaaagaaagacactcCGCGTCCATCATGGAGGATGCTGGAGGGCTACATCTATGCACCTGGAAAAAGGCGTCCAAAAGCAGCGCGCGGCGGGACGTCCTGAAAGCATACCTGGGAGTTTTTGTCATGCTTCATCTCGTGCTTCACACGGAAGCGTCCTCGGTGTCCAAGTCCTGCGATCCGAACTGTTTTTCAGGGAAGTGCATCAACGGGACGTGCGTGTGTGACCACGGCTGGGTCGGGGATCAGTGCCAGCACTGTCAGGGGAGATTCAAGTTAACAGACCTGTCAGGCTCTCTCACAGATGGACCAGTGAACTACAAGTACAAGACCAAATGCACTTGGCTAATAGAAGGATAtcCGAATGCAGTGCTCCGGCTGCGCTTCAATCACTTTGCCACTGAGTGCAGCTGGGACCACATGTACGTCTACGACGGAGACTCCATTTACGCCCCTTTGATTGCCGTCTACAGtgGTCTAGTGGTAGCAGAGACCAGGGCTAACGAGACGGTCCCAGAGGTAGTGACATTGTCCGGCTACGCTCTGCTTCACTTCTTCAGCGACGCTGCCTACAACCTGACCGGCTTCAGCATCGCCTACTCGATGAACTCGTGTCCCAACAACTGTTCGGGCCACGGCCGATGCAGCACAGCCAACTCGGTCTCGGGCCGCGTGTACTGCGAGTGCGATGAGTACTGGAAAGGAGAAGCCTGCGACATCCCGTACTGCAGGGATAACTGTGGCAGCCCGGGCCACGGCTACTGCGACCTGACCGGAGAGAAGCTCTGCGTCTGCAACGACAGCTGGCAAGGTCCAGACTGCTCTCTGTCCGTTCCCTCCACTGAGGCCTTCTGGGTGCTGCCTAGCGTCAAACCGTCGGCTCAGTCTCTGGGCCGGGCGTCCCATCAGGCTCTGGTGCACTCTGGGCTGATGTGGGTGGTGGGAGGATACTCTTTCAACTACTCCAACTACCACATGGTCCTCAACTACAACCTGGAGAGCGGTACGTGGGATGTGGTGCCCGTCAGCAGCGGCCCCCTCTACAGATACGGCCACTCATTGGCTCTGTACCAGGATGACATCTACATGTTTGGTGGGAAGCTGGAGGCGAAATCGGCCAACGTCACGGACGAGCTGTGGGTGTTCAACATCCCCAGGCGCACCTGGTCACCACAGAAACCAGCCCCGCCTCCTCCCTACGCCCTGGAGGGGCACAGCGCCCACGTGGTGGAGCTGGCCGACGGCGAGCCGGTGATGCTGATCTTCTTCGGCTACTCGTCGGTCTACAGCTACAGCAACAAAGTTCAGGAGTACAACATCAGGTCTAACTCGTGGCAGGTTGTGTCTGCCGAAGGGGCCGTGGTCCAGGGAGGGTACGGCCACAGCAGCGTCTACGACGAGGCCAGCGGCTGCGTGTTTGTCCACGGCGGATACAAGGCGCTGAGCAACAACAAATACGGCCTGGTGGACCACATGTACCGATACCACGTCCGCACCAAAACATGATCAGAGATTCCATCCGCGTACCACTAGAGGGAGCACGCATACCACCAGTGGTACTTGTACCACAGTTTGAGAATGAGTGCACTATGTAATTTCATGCACCAGTCTTACTTTTACAGAGGAGCCAAGTGAGCCAACTATCAGTTAATCAAAACTT

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260823 lncRNA upstream 17497 4885973 ~ 4886225 (+) True G192039
TU260821 lncRNA upstream 19619 4883792 ~ 4884103 (+) True G192037
TU260819 lncRNA upstream 20067 4883170 ~ 4883655 (+) True G192035
TU260756 lncRNA upstream 73621 4829619 ~ 4830101 (+) True G191981
TU260737 lncRNA upstream 129944 4726574 ~ 4773778 (+) True G191962
TU260834 lncRNA downstream 252020 5225577 ~ 5248686 (+) False atrnl1a
TU260904 lncRNA downstream 868976 5842533 ~ 5842887 (+) True G192103
TU260901 lncRNA downstream 1075841 6049398 ~ 6190842 (+) True G192100
TU260932 lncRNA downstream 1294840 6268397 ~ 6287371 (+) True G192123
TU260938 lncRNA downstream 1299365 6272922 ~ 6290271 (+) True G192125
XM_039784789.1 mRNA upstream 267197 4629151 ~ 4636525 (+) False LOC120548511
XM_039783773.1 mRNA upstream 287761 4613923 ~ 4615961 (+) True LOC120547947
XM_039783774.1 mRNA upstream 287761 4614701 ~ 4615961 (+) False LOC120547947
XM_039783775.1 mRNA upstream 287990 4613923 ~ 4615732 (+) False LOC120547947
XM_039783771.1 mRNA upstream 325361 4575583 ~ 4578361 (+) True LOC120547943
XM_039783925.1 mRNA downstream 416862 5390419 ~ 5427836 (+) True ccdc172
XM_039783928.1 mRNA downstream 416862 5390419 ~ 5427836 (+) False ccdc172
XM_039783930.1 mRNA downstream 416862 5390419 ~ 5414448 (+) False ccdc172
XM_039783924.1 mRNA downstream 416862 5390419 ~ 5414362 (+) False ccdc172
XM_039783927.1 mRNA downstream 416862 5390419 ~ 5414352 (+) False ccdc172
TU260824 other upstream 16699 4886376 ~ 4887023 (+) True G192040
TU260668 other upstream 615078 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 621002 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 1753178 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 1753836 3149814 ~ 3149886 (+) True trnar-acg_20
TU260911 other downstream 1046565 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 1046565 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 1350958 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 1350958 6324515 ~ 6360991 (+) False itsn1
TU261063 other downstream 1512074 6485631 ~ 6505819 (+) False LOC120548025

Expression Profile