RNA id: TU260904


Basic Information

Item Value
RNA id TU260904
length 239
lncRNA type intronic
GC content 0.47
exon number 2
gene id G192103
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 5842533 ~ 5842887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgggagtcgtacatgtgcagtagctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccatgctagcagctaggtgagcattataacgtgtgttacaaagtgaccacgtttgtctctgaagtaaaggctggactacaatagagctgtttggagcagtttgtgaacagtgttttctgttggagatggtaagtccctttgggggggactttgggctttttcactttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260834 lncRNA upstream 593847 5225577 ~ 5248686 (+) False atrnl1a
TU260823 lncRNA upstream 956308 4885973 ~ 4886225 (+) True G192039
TU260821 lncRNA upstream 958430 4883792 ~ 4884103 (+) True G192037
TU260819 lncRNA upstream 958878 4883170 ~ 4883655 (+) True G192035
TU260756 lncRNA upstream 1012432 4829619 ~ 4830101 (+) True G191981
TU260901 lncRNA downstream 206511 6049398 ~ 6190842 (+) True G192100
TU260932 lncRNA downstream 425510 6268397 ~ 6287371 (+) True G192123
TU260938 lncRNA downstream 430035 6272922 ~ 6290271 (+) True G192125
TU260973 lncRNA downstream 468509 6311396 ~ 6315101 (+) True G192143
TU261053 lncRNA downstream 628652 6471539 ~ 6471881 (+) True G192203
XM_039783925.1 mRNA upstream 414697 5390419 ~ 5427836 (+) True ccdc172
XM_039783928.1 mRNA upstream 414697 5390419 ~ 5427836 (+) False ccdc172
XM_039783930.1 mRNA upstream 428085 5390419 ~ 5414448 (+) False ccdc172
XM_039783924.1 mRNA upstream 428171 5390419 ~ 5414362 (+) False ccdc172
XM_039783927.1 mRNA upstream 428181 5390419 ~ 5414352 (+) False ccdc172
XM_039783881.1 mRNA downstream 453360 6296247 ~ 6308199 (+) True setd4
XM_039783882.1 mRNA downstream 453360 6296247 ~ 6308199 (+) False setd4
XM_039783888.1 mRNA downstream 481628 6324515 ~ 6360991 (+) True itsn1
XM_039783890.1 mRNA downstream 481628 6324515 ~ 6360991 (+) False itsn1
XM_039783891.1 mRNA downstream 481628 6324515 ~ 6360991 (+) False itsn1
TU260824 other upstream 955510 4886376 ~ 4887023 (+) True G192040
TU260668 other upstream 1553889 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 1559813 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 2691989 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 2692647 3149814 ~ 3149886 (+) True trnar-acg_20
TU260911 other downstream 177235 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other downstream 177235 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other downstream 481628 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 481628 6324515 ~ 6360991 (+) False itsn1
TU261063 other downstream 642744 6485631 ~ 6505819 (+) False LOC120548025

Expression Profile