RNA id: TU260913


Basic Information

Item Value
RNA id TU260913
length 504
RNA type TUCP
GC content 0.45
exon number 4
gene id si:dkey-22n8.3
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6020122 ~ 6396899 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggcggccgttcagaatacgatctcatattgtactaaaatagttcaccgaaacgtgtttctgaaaacattttaagagagaaataggccatgcagttgctgaatctgtcttcatttcatctcaacaaagATTTAGATCCAGTCCAGAGACTCTTCCTGGAGACGATCAGAGAATACAAAAACATGCGCAGGTTGAATGGAGGACTGTTGGAGGCGGAGCCAGATTACGAAAAATCCCTGTCAGAGGAGACGGCAAAGCTCCAGAGACTTTATGGAGGAGGAGACCTGAGCAGCTTCCCTCAGTTCACCTTCaccgAGCCCAATATGGACCAGGACTCCAAATGATCCATGACGCCAACTTCCTACTCTTCATGCTCTTCCTCTGACATCTCTCAGACTTCCTCCTCCATTACCTCCTCATCTCAATTTTACTACATGGGAGAACAACAAAGGCGAGAGAAGAGGAAGCTCATCACGTTTGTTTGGGTTATCTGACAttaaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260904 lncRNA upstream 177235 5842533 ~ 5842887 (+) True G192103
TU260834 lncRNA upstream 771436 5225577 ~ 5248686 (+) False atrnl1a
TU260823 lncRNA upstream 1133897 4885973 ~ 4886225 (+) True G192039
TU260821 lncRNA upstream 1136019 4883792 ~ 4884103 (+) True G192037
TU260819 lncRNA upstream 1136467 4883170 ~ 4883655 (+) True G192035
TU261053 lncRNA downstream 74734 6471539 ~ 6471881 (+) True G192203
TU261055 lncRNA downstream 74734 6471539 ~ 6471881 (+) False G192203
TU261058 lncRNA downstream 81106 6477911 ~ 6478234 (+) True G192205
TU261072 lncRNA downstream 109516 6506321 ~ 6507349 (+) True G192212
TU261074 lncRNA downstream 109516 6506321 ~ 6507284 (+) False G192212
XM_039783925.1 mRNA upstream 592286 5390419 ~ 5427836 (+) True ccdc172
XM_039783928.1 mRNA upstream 592286 5390419 ~ 5427836 (+) False ccdc172
XM_039783930.1 mRNA upstream 605674 5390419 ~ 5414448 (+) False ccdc172
XM_039783924.1 mRNA upstream 605760 5390419 ~ 5414362 (+) False ccdc172
XM_039783927.1 mRNA upstream 605770 5390419 ~ 5414352 (+) False ccdc172
XM_039784794.1 mRNA downstream 4226 6401031 ~ 6431130 (+) True pdxkb
XM_039784795.1 mRNA downstream 4226 6401031 ~ 6431130 (+) False pdxkb
XM_039783940.1 mRNA downstream 50339 6447144 ~ 6467228 (+) True plekha3
XM_039783941.1 mRNA downstream 50340 6447145 ~ 6467228 (+) False plekha3
XM_039783942.1 mRNA downstream 88776 6485581 ~ 6501125 (+) False LOC120548025
TU260824 other upstream 1133099 4886376 ~ 4887023 (+) True G192040
TU260668 other upstream 1731478 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 1737402 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 2869578 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 2870236 3149814 ~ 3149886 (+) True trnar-acg_20
TU261063 other downstream 88826 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other downstream 88826 6485631 ~ 6501095 (+) False LOC120548025
TU261142 other downstream 403719 6800524 ~ 6804552 (+) True LOC120547751
unassigned_transcript_1115 other downstream 1554312 7951117 ~ 7951188 (+) True trnaq-cug_15
XR_005637075.1 other downstream 3209720 9606525 ~ 9624564 (+) False ddx43

Expression Profile