RNA id: XM_039783901.1


Basic Information

Item Value
RNA id XM_039783901.1
length 3734
RNA type mRNA
GC content 0.48
exon number 7
gene id si:dkey-22n8.3
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6020122 ~ 6396899 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAGTCTTTGGAGGCTGTAACCAGAGCGCTTTATGCGCTCTAAAAACACACAGGACAGCTGAGCTCTATTACCCAAAAACGTGTCAGCTAGctaataaacaaagaaaaacaaacggtTAGAAGTCGATTTAATCGGTTCGGGCCAACGCATGAAGAGGGTCTTTATCTGCGCGTTtacattagctagctaaatgaGGTCATTGCGATTTGTTATTTggcattttgtgcatttttatCACCCTTTAAAAGATTCCTCAGTGTGTCTAAAGCGTTAAAAACCAGCTTAACACTGTCATGGTGGAGGACGGAGAGCGAAAGGACATGAAGTACTTTCCCAGAGCGACCTGACATTCCTCCTCAACGTTTACCACAGTTAGAAACTTACTTACTATATCCTACACACTTACACAGAGCTGTTTGAATTAAACAACCATGGCCGCTGCATTTGTCAGAAGAGGAATAGGATTATGCtgtattaacagggagttGTGCAGAGTGGTATGGAGGCGGCAAACTGCACTGTTCAGCTCCAAACCGTCAGATAGACAACCCCCCCGCAGGACACACATCAAGAAAGCCAAGCCTCAGCCAGCGGTGGATGTCGCTAAACTCCTGGAGCAGCTCTTCTCCCAGCGCAGGCCGGGCACGGCGCCTCCTGCTGGTAAAGCTCGACCTGCCAAAGCTTCCTCAGTTCCTACCCAACCTCCTTCCACCTCCTCAGTGAAGGTCTCCACCCCAAATGCTCCTCTTTTGTCAAAGACTGAACCAGCAGTGTCTGTCTTTTCTGCTGCTTCTACTTTTAAACCCGTTGATGCTGATAGTCTTTCGTATGTGACTCTTCCTACAACCTCAGGTTCCTCTCCAAGCAGCACAACACCGGCATCGTTAGGATCAGAAGCAGCGGCGATAGAATGCCAAACCTCGGCTGAAACAATAAAAACCAAAGTAGAAACCGCCACGGAGCCAGTTGAACTCAAAACTGCCACAACACTGCCCTTATTAGCCCGCACGGTGGAGACAAACGCAGAGACATCATCTTTTCCAGCTGCTACACGAGAACCCATAATAGAAACTACAATAGAATCACGAGTAGAGCCGCGCCTATCTCCTGCGGAAACACCAGAAGTTAGAGCTGCTGTTGTTGAATGTCCCGTAGAGCCTACCGTAGATGCTCCAACTGAGGAAGTACAAACCAAACGCGCAGACTCAGGAGTGGTGAATGTCTCACACACTGCCAAAGAAGAACCCCTAATAGAAACTACAATAGAATCCCCAGTAGAAGCCAGCCGTTTTCCTGTGGAAACACTAGAAACTAGAGCCGATGTTGTTGAGCGTCCAGTAGAGCCTACGGTAGACGTCAAAGTAGATGCAGCAGCTCAGAAAGTAGAAAGAAAAAGCCCAGATTTAAGAGCGGTTGACATTTTGCACACTGCAACAGTAGAACCCGCATTAGAAACTACAGTTGAACCATCAGTAGAGACCAGCGCCTCTCCTCTGGAAACACTAGAGAATAGAGCTGCTCTTGTCGAATGTGCAGTAGAGCGTACAGTAGACGCTCCAGCTCATGCAGTACAAACCAACAGCACAGACTCAGGAGTGGTTGATGTCTCACAAACTACCAAAGAAGAACCCCAAATAGAAACTACAATAGAATCCCCAGTAGAAGCCAGACATTTTCCTGTGCAAACACTAGAGAGTAGAGCTGCTCTTGCCGAATGTGCAGTAGAGCGTACAGTCGATGCAACAGTAGATGCTCCAGCTCAAGCGGTACAAACCAACAGCACAGATCCTGTTAATCTCTTGCACACTGCTGAAGGAGAACGCTTAATAGAAACTACAATAAAGCCATCAGTAGAGGCCGGCTCCTCTCCTCTGGAAGCACTAGAGAGCAGATCTGCTGTGGCTGAAGGTTCAGTAGAAAGTACAACAGAGGCGGAAGCAGATACAGCACCTCAAGCAGTACAAACCAACAGCACAGACTCAGGTCCTGCTGAAGAAGAACATTTAATAGAAACCATAGAACCAGGAGCAGAGGCCAGCAGTTCTTCTGTTTCTGAAGGTACAATAGAGCCTACGATAGGAACTGAAGCCACTGATAACCTCTCATGCACTACCTTAATCAAAAATGCACAAGAATCTGCGCCCTTGCCTTTGAAAAACGAATCTACAGTAGAATCACGCTCAGTATTTGtcgctgtggaggagggagtGAGCCAGTCCAAAGACATTACGTTAGAGTCAGTAACGCTCCATGTAGACGAGGCTCTGGTAGGGTCTTTAATAACTGATGAGCTCCTCCGAACAAAATCGATGCTCGATGAAAAGGCAGAAAAACAGTTTCAAGAGTTGTCAGTCCAGACGGGGGTTGGAGCCGAGGACAAAGCCGCAGCTGAAACGGAGAATTCAAGCAAAGACGAGAGTGAGATTTTAACTGACGTTCTTTTAAATCGGGACTCTCTGTCTGAGGATCTTCAAGAGTTAGAAGGAGAAGGTGGCACTTTGGTGAAAGAGCGTCTCTGTCATGTTCCTGCGGTGCTTTCCGAAACTCCTGGCACGTTAAAAACCGCTTCGGATCCACCTGTAGGAGCACATGGAGAGTCTTTGCAGACGGAGGAGAAGGCACTCGAAGCAGAGGCCATGACGCTGGAATCTAGAACTTTAGCGAAAGTGAAGGCTGAAGTTGGAGGCCTTGAAACCGATGTACTGCGAGAAACGAGGAATGCACTCGAGAACGAAGCTGTTGCACTAGCAAAAGAGGAGAAGATGAAAGTTACTGCCACAATAGAAGACGTTGCAGTCTTCGAGGATGCAAAGGCTGACATTTTAACACTTGATTCTATCTCTGAAGCCACCGATGCAATACAAACGGCAACAACTGTTATGCTGGAGTCCACGTTCGGTTCTGAGCAAGGACCGAGGCAGTCTCCTGACGCTTTACTTGTTCACCAACAAGTGGGGCAACTGGATGAAGCGACTGGTCAGGAAGCAGAAAAGGAGTCCGGAGAGCAGCGAGCGAACTTCTTGGAGGCCATGAGTCTGAAGTCTTTGACTTTGGTTGAAGATGAGGCCTCCGTGGGAACTCTGGAAAATGCGTCTCTGAGCGAAACCACCAATTATCTGGAGACAGAAAGGGAGATTGTTGCTGGAGAGAAGAGGATGGAGGTAGATAATATGGTGGCATCGGAAGAGACGTCTGAGGCTTTGAAGATGGAGTCTCTATCTCAGTCTGAAGCTGGCGTTCTGTCTGAAGACCTGCAGACCGATGCACTGATGGATGAGCTACTCTTTTCCGTTCCTGGACACGTGACAGGGGTAACGGAGCATGTAAGAGCTGATATTTTGGATGATTTAGATCCAGTCCAGAGACTCTTCCTGGAGACGATCAGAGAATACAAAAACATGCGCAGGTTGAATGGAGGACTGTTGGAGGCGGAGCCAGATTACGAAAAATCCCTGTCAGAGGAGACGGCAAAGCTCCAGAGACTTTATGGAGGAGGAGACCTGAGCAGCTTCCCTCAGTTCACCTTCaccgAGCCCAATATGGACCAGGACTCCAAATGATCCATGACGCCAACTTCCTACTCTTCATGCTCTTCCTCTGACATCTCTCAGACTTCCTCCTCCATTACCTCCTCATCTCAATTTTACTACATGGGAGAACAACAAAGGCGAGAGAAGAGGAAGCTCATCACGTTTGTTTGGGTTATCTGACAttaaaataaaggaaaatgtA

Function

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260973 lncRNA upstream 69401 6311396 ~ 6315101 (+) True G192143
TU260938 lncRNA upstream 94231 6272922 ~ 6290271 (+) True G192125
TU260932 lncRNA upstream 97131 6268397 ~ 6287371 (+) True G192123
TU260901 lncRNA upstream 193660 6049398 ~ 6190842 (+) True G192100
TU260904 lncRNA upstream 541615 5842533 ~ 5842887 (+) True G192103
TU261053 lncRNA downstream 74724 6471539 ~ 6471881 (+) True G192203
TU261055 lncRNA downstream 74724 6471539 ~ 6471881 (+) False G192203
TU261058 lncRNA downstream 81096 6477911 ~ 6478234 (+) True G192205
TU261072 lncRNA downstream 109506 6506321 ~ 6507349 (+) True G192212
TU261074 lncRNA downstream 109506 6506321 ~ 6507284 (+) False G192212
XM_039783895.1 mRNA upstream 7086 6368037 ~ 6377416 (+) True LOC120548010
XM_039783896.1 mRNA upstream 7086 6368037 ~ 6377416 (+) False LOC120548010
XM_039783892.1 mRNA upstream 23511 6324515 ~ 6360991 (+) False itsn1
XM_039784794.1 mRNA downstream 4216 6401031 ~ 6431130 (+) True pdxkb
XM_039784795.1 mRNA downstream 4216 6401031 ~ 6431130 (+) False pdxkb
XM_039783940.1 mRNA downstream 50329 6447144 ~ 6467228 (+) True plekha3
XM_039783941.1 mRNA downstream 50330 6447145 ~ 6467228 (+) False plekha3
XM_039783942.1 mRNA downstream 88766 6485581 ~ 6501125 (+) False LOC120548025
XR_005637124.1 other upstream 23511 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other upstream 23511 6324515 ~ 6360991 (+) False itsn1
TU260824 other upstream 1497479 4886376 ~ 4887023 (+) True G192040
TU260668 other upstream 2095858 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 2101782 4271973 ~ 4282720 (+) False arfgef3
TU261063 other downstream 88816 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other downstream 88816 6485631 ~ 6501095 (+) False LOC120548025
TU261142 other downstream 403709 6800524 ~ 6804552 (+) True LOC120547751
unassigned_transcript_1115 other downstream 1554302 7951117 ~ 7951188 (+) True trnaq-cug_15
XR_005637075.1 other downstream 3209710 9606525 ~ 9624564 (+) False ddx43

Expression Profile