RNA id: TU260938


Basic Information

Item Value
RNA id TU260938
length 308
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G192125
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6272922 ~ 6290271 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGTAAGTCCAGTCTTGGACGTTCCATACGCCGTTTCAGGCCAGCCGCCCTTCTGCAGCTCGCCCTTCTTGGCCGCGTCAACAAACTGCTGCATCAGCCCCACCAGCTCCTCCTCTGTGATGTCCTCGCTGCGGAAACGCTGCTGGAGAGCCGCGCTGCACTTGTTCAAAGTGCGGGAGCCGACGAAGCTGGAGACGTTCACCTCCTCCTCTGTGATGTCCTCGCTGCGGAAACGCTGCTGGAGAGCCGCGCTGCACTTGTTCAAAGTGAGGGAGCTGACGAAGCTGGAGATGTTCACCACACGgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260901 lncRNA upstream 82080 6049398 ~ 6190842 (+) True G192100
TU260904 lncRNA upstream 430035 5842533 ~ 5842887 (+) True G192103
TU260834 lncRNA upstream 1024236 5225577 ~ 5248686 (+) False atrnl1a
TU260823 lncRNA upstream 1386697 4885973 ~ 4886225 (+) True G192039
TU260821 lncRNA upstream 1388819 4883792 ~ 4884103 (+) True G192037
TU260973 lncRNA downstream 21125 6311396 ~ 6315101 (+) True G192143
TU261053 lncRNA downstream 181268 6471539 ~ 6471881 (+) True G192203
TU261055 lncRNA downstream 181268 6471539 ~ 6471881 (+) False G192203
TU261058 lncRNA downstream 187640 6477911 ~ 6478234 (+) True G192205
TU261072 lncRNA downstream 216050 6506321 ~ 6507349 (+) True G192212
XM_039784271.1 mRNA upstream 82609 5779189 ~ 6190313 (+) True LOC120548190
XM_039783923.1 mRNA upstream 864936 5390419 ~ 5407986 (+) False ccdc172
XM_039783881.1 mRNA downstream 5976 6296247 ~ 6308199 (+) True setd4
XM_039783882.1 mRNA downstream 5976 6296247 ~ 6308199 (+) False setd4
XM_039783888.1 mRNA downstream 34244 6324515 ~ 6360991 (+) True itsn1
XM_039783890.1 mRNA downstream 34244 6324515 ~ 6360991 (+) False itsn1
XM_039783891.1 mRNA downstream 34244 6324515 ~ 6360991 (+) False itsn1
TU260824 other upstream 1385899 4886376 ~ 4887023 (+) True G192040
TU260668 other upstream 1984278 4287897 ~ 4288644 (+) True G191903
TU260665 other upstream 1990202 4271973 ~ 4282720 (+) False arfgef3
unassigned_transcript_1109 other upstream 3122378 3150473 ~ 3150544 (+) True trnah-gug_17
unassigned_transcript_1108 other upstream 3123036 3149814 ~ 3149886 (+) True trnar-acg_20
XR_005637124.1 other downstream 34244 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other downstream 34244 6324515 ~ 6360991 (+) False itsn1
TU261063 other downstream 195360 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other downstream 195360 6485631 ~ 6501095 (+) False LOC120548025
TU261142 other downstream 510253 6800524 ~ 6804552 (+) True LOC120547751

Expression Profile