RNA id: TU261055


Basic Information

Item Value
RNA id TU261055
length 227
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G192203
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6471539 ~ 6471881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgtgtcacgtttcctaaacccaactgtcccgttcttctttacctaaacccaactgtcccgttcttctttacctaaatccaactgtcccgttcttctttacctaaacccaactgtcccgttcttctttacctaaacccaactctcccgttcttcttttcctaaacccatctgtcccattcttcttttcctaaacccaactgtcccgttcttctttaactaaatccaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260973 lncRNA upstream 156438 6311396 ~ 6315101 (+) True G192143
TU260938 lncRNA upstream 181268 6272922 ~ 6290271 (+) True G192125
TU260932 lncRNA upstream 184168 6268397 ~ 6287371 (+) True G192123
TU260901 lncRNA upstream 280697 6049398 ~ 6190842 (+) True G192100
TU260904 lncRNA upstream 628652 5842533 ~ 5842887 (+) True G192103
TU261058 lncRNA downstream 6030 6477911 ~ 6478234 (+) True G192205
TU261072 lncRNA downstream 34440 6506321 ~ 6507349 (+) True G192212
TU261074 lncRNA downstream 34440 6506321 ~ 6507284 (+) False G192212
TU261067 lncRNA downstream 34620 6506501 ~ 6507284 (+) False G192212
TU261069 lncRNA downstream 34620 6506501 ~ 6507436 (+) False G192212
XM_039783940.1 mRNA upstream 4311 6447144 ~ 6467228 (+) True plekha3
XM_039783941.1 mRNA upstream 4311 6447145 ~ 6467228 (+) False plekha3
XM_039784794.1 mRNA upstream 40409 6401031 ~ 6431130 (+) True pdxkb
XM_039784795.1 mRNA upstream 40409 6401031 ~ 6431130 (+) False pdxkb
XM_039783904.1 mRNA upstream 74724 6387945 ~ 6396815 (+) False si:dkey-22n8.3
XM_039783942.1 mRNA downstream 13700 6485581 ~ 6501125 (+) False LOC120548025
XM_039783944.1 mRNA downstream 13705 6485586 ~ 6501125 (+) False LOC120548025
XM_039783943.1 mRNA downstream 13712 6485593 ~ 6505851 (+) True LOC120548025
XM_039783481.1 mRNA downstream 82005 6553886 ~ 6583738 (+) True LOC120547793
XM_039783480.1 mRNA downstream 83717 6555598 ~ 6583738 (+) False LOC120547793
TU260911 other upstream 74640 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other upstream 74734 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other upstream 110548 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other upstream 110548 6324515 ~ 6360991 (+) False itsn1
TU260824 other upstream 1584516 4886376 ~ 4887023 (+) True G192040
TU261063 other downstream 13750 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other downstream 13750 6485631 ~ 6501095 (+) False LOC120548025
TU261142 other downstream 328643 6800524 ~ 6804552 (+) True LOC120547751
unassigned_transcript_1115 other downstream 1479236 7951117 ~ 7951188 (+) True trnaq-cug_15
XR_005637075.1 other downstream 3134644 9606525 ~ 9624564 (+) False ddx43

Expression Profile