RNA id: XM_039783942.1


Basic Information

Item Value
RNA id XM_039783942.1
length 863
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC120548025
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 6485581 ~ 6505851 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctctctctctctctctctctctctctctctctttctgtctgtcattGTTTCTTTCTACCTCTCAGTCAGTAATTATGGAGCCCAGCAGTCCGAAGAAGATCCAGTTTGCTGTACCTCCGCTGCAGGGACAGCTGGACCCACAGGCCGCAGAACATATCCGTCGCAGAAGACCAACTCCTGCCACTCTGCAGATCTACAGACAACCTGGcacagATGTTGGAGATCAACACAACGCCAGCGGAGAGTCACAGGCTTCAGATTCCTCTCAGAGGAAGCAGAGCACCTACGACCCGCCCACCATGAAAGAGCTTCAGCTGGGGGTGGAGCACCACCTTCTGGGGGCTGGGCTCTGTGACACAGACGGCCAGCTGAGCCCAATCACAGCACAGCTCTATGCCACCGCTTCCATGTGGGCGAATCACAATGGGCCAGAGGAAGCCAATGGAAATGAGGCGAGTctgctgttagccaatcaggaGAGAGGAGTGGCAGAGAGCAACAGTTCAGGGGATTTGTCATGCGACCACAAAAAGGAAGCATCCAGTCCCGACTCCGTCTCCCGATAGCCACCTTTGCTTACTTTCATCTCTTTGTCTCTCAATAACCAACTTTTCCGCTGTTACTCACTGCTGTTCATCTGATCCCACTAACACACTGCTTCACTCTTGTGCTTCACATAAATACTGTAGGATTTGATTTGGCATccatcctccctctctttcacgcacaaatacagacacataaaGTTTAGTTAAATGTGCTAATTCAGTCTACATTTAAATTACTGTAGGTGACGTTGGTGAGGTTTTGCTTGTGTAGAAATGGCTGTGAATAAAGATGTAATATATTGAAACATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261058 lncRNA upstream 7347 6477911 ~ 6478234 (+) True G192205
TU261053 lncRNA upstream 13700 6471539 ~ 6471881 (+) True G192203
TU261055 lncRNA upstream 13700 6471539 ~ 6471881 (+) False G192203
TU260973 lncRNA upstream 170480 6311396 ~ 6315101 (+) True G192143
TU260938 lncRNA upstream 195310 6272922 ~ 6290271 (+) True G192125
TU261072 lncRNA downstream 5196 6506321 ~ 6507349 (+) True G192212
TU261074 lncRNA downstream 5196 6506321 ~ 6507284 (+) False G192212
TU261067 lncRNA downstream 5376 6506501 ~ 6507284 (+) False G192212
TU261069 lncRNA downstream 5376 6506501 ~ 6507436 (+) False G192212
TU261076 lncRNA downstream 8599 6509724 ~ 6510442 (+) True G192214
XM_039783940.1 mRNA upstream 18353 6447144 ~ 6467228 (+) True plekha3
XM_039783941.1 mRNA upstream 18353 6447145 ~ 6467228 (+) False plekha3
XM_039784794.1 mRNA upstream 54451 6401031 ~ 6431130 (+) True pdxkb
XM_039784795.1 mRNA upstream 54451 6401031 ~ 6431130 (+) False pdxkb
XM_039783899.1 mRNA upstream 88766 6384502 ~ 6396815 (+) False si:dkey-22n8.3
XM_039783481.1 mRNA downstream 52761 6553886 ~ 6583738 (+) True LOC120547793
XM_039783480.1 mRNA downstream 54473 6555598 ~ 6583738 (+) False LOC120547793
XM_039784314.1 mRNA downstream 94916 6596041 ~ 6672024 (+) True LOC120548221
XM_039783386.1 mRNA downstream 274618 6775743 ~ 6789086 (+) True zc3h15
XM_039783390.1 mRNA downstream 299389 6800514 ~ 6803757 (+) False LOC120547751
TU260911 other upstream 88682 6020122 ~ 6396899 (+) False si:dkey-22n8.3
TU260913 other upstream 88776 6020122 ~ 6396805 (+) False si:dkey-22n8.3
XR_005637124.1 other upstream 124590 6324515 ~ 6360991 (+) False itsn1
XR_005637125.1 other upstream 124590 6324515 ~ 6360991 (+) False itsn1
TU260824 other upstream 1598558 4886376 ~ 4887023 (+) True G192040
TU261142 other downstream 299399 6800524 ~ 6804552 (+) True LOC120547751
unassigned_transcript_1115 other downstream 1449992 7951117 ~ 7951188 (+) True trnaq-cug_15
XR_005637075.1 other downstream 3105400 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 3813821 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 3940402 10441527 ~ 10442085 (+) True G192834

Expression Profile