RNA id: TU261217


Basic Information

Item Value
RNA id TU261217
length 261
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G192333
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 7128852 ~ 7219024 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacaaacacacacacagagacgcacacacacacacacacacacacacacaaacacacacacacacacaaacacacacacacacacacacacacacacacacatacacacacatacacacacacacacacacatacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261213 lncRNA upstream 5674 7122200 ~ 7123178 (+) True G192329
TU261154 lncRNA upstream 194174 6871964 ~ 6934678 (+) False G192282
TU261156 lncRNA upstream 254635 6834017 ~ 6874217 (+) True G192282
TU261158 lncRNA upstream 266041 6860326 ~ 6862811 (+) True G192283
TU261124 lncRNA upstream 339776 6788199 ~ 6789076 (+) False zc3h15
TU261246 lncRNA downstream 616399 7835423 ~ 7835707 (+) True G192359
TU261262 lncRNA downstream 687546 7906570 ~ 7906940 (+) True G192375
TU261268 lncRNA downstream 688739 7907763 ~ 7913357 (+) False G192381
TU261269 lncRNA downstream 688739 7907763 ~ 7952125 (+) True G192381
TU261311 lncRNA downstream 854757 8073781 ~ 8074959 (+) True G192412
XM_039784230.1 mRNA upstream 268666 6842493 ~ 6860186 (+) True supt3h
XM_039784231.1 mRNA upstream 268666 6849195 ~ 6860186 (+) False supt3h
XM_039783135.1 mRNA upstream 290862 6829571 ~ 6837990 (+) True LOC120547615
XM_039783136.1 mRNA upstream 290864 6829571 ~ 6837988 (+) False LOC120547615
XM_039783391.1 mRNA upstream 325095 6800927 ~ 6803757 (+) False LOC120547751
XM_039783873.1 mRNA downstream 474564 7693588 ~ 7790218 (+) True cdh11
XM_039783874.1 mRNA downstream 474564 7693588 ~ 7790218 (+) False cdh11
XM_039783875.1 mRNA downstream 474564 7693588 ~ 7790218 (+) False cdh11
XM_039783876.1 mRNA downstream 474564 7693588 ~ 7790218 (+) False cdh11
XM_039783877.1 mRNA downstream 668964 7887988 ~ 7905745 (+) False chrna1
TU261142 other upstream 324300 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 623033 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 627757 6485631 ~ 6501095 (+) False LOC120548025
XR_005637124.1 other upstream 767861 6324515 ~ 6360991 (+) False itsn1
unassigned_transcript_1115 other downstream 732093 7951117 ~ 7951188 (+) True trnaq-cug_15
XR_005637075.1 other downstream 2387501 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 3095922 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 3222503 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 3367754 10586778 ~ 10589051 (+) False mrpl57

Expression Profile