RNA id: TU261269


Basic Information

Item Value
RNA id TU261269
length 4198
lncRNA type read_through
GC content 0.38
exon number 2
gene id G192381
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 7907763 ~ 7952125 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTTATTAAGACGTGCCATGCGCCTACTTAATGACAACCAGCTTTGGCAGAAAGGTAACTGATAAATCTAGCAGagaaaaaacaaactacaaatgCAAAGTAAACAGGTATTACACAAGTCAAGAAGtttgttaaatattaaatataaggGACAGCTTCATTAGAATTTTTACCACATTTTCACCACCAGCAGGTATTAAGTGGGATTTAAGAGCTTGTTAACACTGGAACCATTCAGCTAACCACAAGTCAATCAAAAATCATGTCAAGCTGTGGAGTCAGGCAGCTGTAAATTCATTACAAGATCTCTCTTCAACATTCAACAAAGGTTTGTCCAAAAGCACGTTTGCTGCCATGTACAGACTCCGAAGGCTAGCCCAAACCTTTAAGGCCAACTTCTGCCAAATGATTCTGGGTTGTTGCGAGGTTTTGAGGAGGGCAACAACTAacttgaaacacacacagaattagTGTGAAAatcaaaaactaaacattaaatagaatgtattgtgttgtctgtgtACCCCCCTCAAGAATACGTTGCCCACatagttgtgttgtgtgtgtttctaggaCCAGACCTGTACAACACAGGTGATACcacatatttacatttgcatAGACACCATTTCTTCTGGTTCCATTTCATAACAAACTGAGAAATTATTGTCAAAAACATGAGGTGCTAGTGCTGGTCAAACGAACCATGAACCTCCTACTTTGTATGCTGCTACAGTAGCTAGACACAGGGCAGATTACACTGTAAACTCGTGAAAATAACTGTAGCAACCAAGGCACGCACTATGATTGCCTACTGTGAGTGCACttttaaaacacttaaaatgaaagtaaacaaaagaagaaaacaccaaaatatttcaacaaatgcTACAGAACACAAACCAGGCCTATACTTTTAAGCGGTTGTTTCAATACCATGGCAATTAAAGACTACATCTCAAAAGGATTAAAACTAAACAGTGCAGCCATATTTGTACATGAATATGgccaaataaatacaaagagaAACTCAGTGCAAGTCTTGAAATACAGATAAAACAACAGTGCATTTGGCAAATTATATTCCTATTGACAACTTTGATTGGCAATAACCAGATCGAGATAAATTGGCAGTTTTAGCTCCAGTCTGTTAAATGATTTCACCTTCCAAAATGTTCAGTTTAGTCAGAATCTGTTTCATTTTAAGTTCAACTCATCAAcatggtggctcagtggttagcactgctgcTTCTCAGCAAGTAGGCACTGATGAGTACTGGGCTGGGTCCCCGGTATGGGCAGGGCCCTTCTGTGTGGTTATCCCCATGTACTGCAACTCCCTACTTCAAACAAAGATCTTCATAAAACCCAACAACTCAAATCAATTGTAGAGGTTTACTTATCCCACACTACAATACAATCTAGGTTAGGTAATGAAGACCTGATTAGTCCGGATGTTTCTATCTAGGGAGAGCGCAGATAAAGCAGCAGGGTTATATGGTTTTtaccacacattcaaaatagTCTACAAACATGCGCCTCTgctcaaaacacacattttctcccacaccactGATGGCTGATCTGAGTTCAGTTATTGGGTGCTGCATGCATTGTTCTGGTTAACTTAAGTAATAAGTGGGACATTTAACATAATTTGTTGCTGACACAAGTTGGCCTACAAAAACGTTAGACCGCATGGGACTTCCTCACCAACAAAGAAGAAACAATGGCATGAGAGGTCAACAACAGTCAATATATAGACTTGCAGCAGCTGCTCTCTCTGGTTAGTGCCATCCTTTTTCTTGCAGATGTGAGTGCAGCTAACGAGGAGAACATTAGCTGCGTTTTCTGGGTATACCTCTCGTCTGGGACAAAAACATcctaaaataaaacttaaagATTCAGCAGGACAAGTGTTTGGTAAAATGTGGGTATAATAAATGTATCCAAACAAAATGGGGGGGATGAAAAGCAGGAGATGAAGAAAGCTATAGCAAGACCTTGAAACTTAATATCATACTGTTAACACAATTGATGATGTCCTGATTCACAGCAGGTTTGTCTTAAGATGCACTTGGTTTGATTTCATCTTTTCTCACCAATCAACAAAACTATAAATaacatgtatgtactgtagttacattttaaatgtaaaaatactgtaATAAACTGTGATATTTAGCAAATTACACAGGCACCCCAGACACTGAGTGGGGTCAGGGTCAGTGAAGGAATTAAGATTTAAGCATGTTTAAGTTTCTGCTGCGCCTAAAGACAAACCATTTGTGAACCAGCAGTTCtaaaatcacaaatcacaacTTTTAACAAATCATGCCTAAAAGAACCTTATAGGGTAAATTATAGAATACTGACTAGGTCAGTCCCCACATACAGAGCATTATCAGCAGCCAACTGCTCCCATTGAGAAAAAAAGCCTTAAGATTTAAACTACAATCATCAACCTGACACCTTCGCAGTCAATCAAACTCAAAAGGCCATAATATGTTGGCATCATTTTAGGCAATAAAGTTAGACAACTGTATTATTACATATGATGAATATAATGCAGTATGTTAATGTTTTTCATTATGAATACACACCATTTACTACATCGCCTACATAATCTCCTCTACGTGGTTTGTCTTAGTCATTtagacaaaagtaaaagtgtGATTGATGTAGTTTTTGGTTGCaaggaaaaacaatattgttCAACTATTGTTGGTGACAATCCTTGTTCACTTATATTGCTTAAAAATGCCACCTGTCTATCATGGCCAATACCAACACCTTTAGTTTGGACCGAATGATCCGACAGCCCTGGCCCTCTTCTGGACTCTCTGCAACTACAATGGCTGAGACTCTGTCTCACAGGGGGTGCTGGGACTCTGCTCGGATTccacctcttcctccttctgAACCCCgtctttttcctcctcctcctgctgctgctgctcctcctgctgctgctgctccactgATTGGCTCTCACTCTCTACTTCTTTAGTGGGTCCTTCATCTTCTACCAACTCTCTCTCATCTGAGGAGAAGATATGCAAGTAAGACATGTATATAACCAGTACATGACTATACAGAACAATATGGAAGggtgagagaaagagggataATGTGAATAGTTTGCAATGCAACAAATGATTGGTTGTTGGGATTTAAAATAATCAGTGATGAATCAAAGAAAATTAGCAGCATTCCCTTTGTTAGGGTGAACATAAGTTACACAAGACATAGGAAAAGAAAAGATTGTAAGAGGCTTTACTAACATCCCTTAAAATCTCCCTTCTCCCATCCAACAACACGGTTTATAAGAGGataattcaaactgtaaaatgtctgttcaacacaaagaaaagcccTTTCATCATCAAAATCAACAGCAGAGGCTATGGTGCTGCAGATACACATATGTTAAGAAGAtcatataattatattattagaaATCACTGGGTCTTAATGTAACGCTTAGTATGTATGTTTCACTGTGTATCTTCACAATCTAAATGCACCATTATTTGCACACTTTGAGATTAATtccattacataaaaaaatcatgtttGGACAGGATTAATATTCCAGGTCATCCAATAACACGAGAATATTCTGGAGAACAATCACATGAAACACGTCACCTGCTGAACTGAAAATAACTGGAAACGCATGTCTGAATGGGTAAAAACTCAAAactatattttaaaaaggtgccTGTACAGATTGGCCTTAAATTATGGGATGAACAATAAAAAGTAGGTATTGGGCCCTCTAATTACATCTAGGTTAATGTAGGCGTAAAAATCATGTTTGGACAGGATTAATATTCCAGGAGAAGACAGGTAATACAGCCCTGCTCTTTGGTGACTACTGTAAAACGTATTGCTGTGGACTGCACTGTCAAGAGTACTTTTGGCTTTTTTAAGACAATTTAgacattaattaacattaattCTGTTGATTGGAGGAGAGCAAATCAATCAATTATAAAATCCATCCAAATATACTGTGCACTCAGTGAAGACCAGATCTGGGTcaaacaagtgttttttttttaatttaattcagaCAATACTAAGTCAGTTGTTCAGTTTCTGTGATTTTCTAAACTTTGCAGGACGGAATTTGAATTCTCTGAATAGGATGAAATGTATTTGGAAACACGGTTTGACCCAGATTTGGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261262 lncRNA upstream 823 7906570 ~ 7906940 (+) True G192375
TU261246 lncRNA upstream 72056 7835423 ~ 7835707 (+) True G192359
TU261217 lncRNA upstream 688739 7128852 ~ 7219024 (+) True G192333
TU261213 lncRNA upstream 784585 7122200 ~ 7123178 (+) True G192329
TU261154 lncRNA upstream 973085 6871964 ~ 6934678 (+) False G192282
TU261311 lncRNA downstream 121656 8073781 ~ 8074959 (+) True G192412
TU261305 lncRNA downstream 123805 8075930 ~ 8101153 (+) True bean1
TU261312 lncRNA downstream 172793 8124918 ~ 8125993 (+) True G192413
TU261307 lncRNA downstream 174593 8126718 ~ 8129363 (+) True LOC120548141
XR_005637145.1 lncRNA downstream 174874 8126999 ~ 8129361 (+) False LOC120548141
XM_039783877.1 mRNA upstream 2018 7887988 ~ 7905745 (+) False chrna1
XM_039783878.1 mRNA upstream 2018 7897153 ~ 7905745 (+) True chrna1
XM_039783874.1 mRNA upstream 117545 7693588 ~ 7790218 (+) False cdh11
XM_039784379.1 mRNA downstream 15247 7967372 ~ 7970313 (+) True LOC120548260
XM_039784378.1 mRNA downstream 20306 7972431 ~ 7981678 (+) True mtx2
XM_039784807.1 mRNA downstream 68535 8020660 ~ 8052485 (+) False cdh5
XM_039784808.1 mRNA downstream 79338 8031463 ~ 8057884 (+) True cdh5
XM_039784812.1 mRNA downstream 114211 8066336 ~ 8119063 (+) False bean1
TU261142 other upstream 1103211 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 1401944 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 1406668 6485631 ~ 6501095 (+) False LOC120548025
XR_005637124.1 other upstream 1546772 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 1654400 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 2362821 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 2489402 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 2634653 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 2634697 10586822 ~ 10591159 (+) False mrpl57

Expression Profile