RNA id: TU261307


Basic Information

Item Value
RNA id TU261307
length 709
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC120548141
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 8126718 ~ 8129363 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTGCATAATTTACCTTATGTGGATGTAAAACCCCCTCAAATTAAAACTTAGTGTCAGAACTTTACCTTCATAATCATTGTTTCAGTTCAGATTCAATCATTTTTACACAATAAAACGTGTATTAATGCTTTTATGACTGCGGTGTGTCTGTAACACAATCAATTCAGTTAAGCCACATATCAGTGTGAGCAGGGAGGAGCCGTTTATCACGCTCTGTGGTTTTGAATCCACCTAGTAAGTGAGTGATTTATTTTTAGAATCTCTTTTTCCTAAAACTGAACCGGTTGGATTGTGAAGATGctttagacacagacacactcagcCTGAGGACTGCTGGTCTGGACACTCACAACAGAGACATAGAGCCATAAACAGTGACTTCCCTGTTAAAGACCCACTTacagactgctgctgctgagtttGACAGCAGAGaaaatgaaagctcgGATTGTGTTCCTGCTCTTTGCTCTGGTGGCTGTGCTTCAAGCGATGCCAACTGTTCCTCACAAGGACCGGCTAGTTGTTCCAGAGGAAGTGGCCTTACAGGACATCGTGGAGGCTGATTTGACTGACTTGAGGCCAGCCACAACAACAATGAAATCTCCGAGGATAAGCAAGGAAAGATGACCATCCATGAGAGGAAAGGGGAACAAATGGTTTCAGCCAAAAGAGGATGAATAAATAAGTACTACAATAAGAAAAAACA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261312 lncRNA upstream 725 8124918 ~ 8125993 (+) True G192413
TU261305 lncRNA upstream 25565 8075930 ~ 8101153 (+) True bean1
TU261311 lncRNA upstream 51759 8073781 ~ 8074959 (+) True G192412
TU261269 lncRNA upstream 174593 7907763 ~ 7952125 (+) True G192381
TU261268 lncRNA upstream 213361 7907763 ~ 7913357 (+) False G192381
TU261368 lncRNA downstream 240015 8369378 ~ 8377699 (+) True G192464
TU261457 lncRNA downstream 728628 8857991 ~ 8904877 (+) True G192530
TU261455 lncRNA downstream 749795 8879158 ~ 8904877 (+) False G192530
XR_005637142.1 lncRNA downstream 847841 8977204 ~ 9058418 (+) True LOC120548135
XR_005637143.1 lncRNA downstream 847841 8977204 ~ 9058418 (+) False LOC120548135
XM_039784812.1 mRNA upstream 7655 8066336 ~ 8119063 (+) False bean1
XM_039784813.1 mRNA upstream 7655 8066883 ~ 8119063 (+) False bean1
XM_039784811.1 mRNA upstream 7656 8066336 ~ 8119062 (+) False bean1
XM_039784810.1 mRNA upstream 7656 8075943 ~ 8119062 (+) False bean1
XM_039784808.1 mRNA upstream 68834 8031463 ~ 8057884 (+) True cdh5
XM_039784656.1 mRNA downstream 1219 8130582 ~ 8137806 (+) True LOC120548392
XM_039784354.1 mRNA downstream 126051 8255414 ~ 8328929 (+) True LOC120548244
XM_039784111.1 mRNA downstream 291216 8420579 ~ 8450391 (+) True b3gnt2b
XM_039784110.1 mRNA downstream 291216 8420579 ~ 8450391 (+) False b3gnt2b
XM_039783401.1 mRNA downstream 352063 8481426 ~ 8641787 (+) True ehbp1
unassigned_transcript_1115 other upstream 175530 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 1322166 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 1620899 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 1625623 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 1765727 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 1477162 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 2185583 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 2312164 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 2457415 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 2457459 10586822 ~ 10591159 (+) False mrpl57

Expression Profile