RNA id: TU261368


Basic Information

Item Value
RNA id TU261368
length 1260
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G192464
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 8369378 ~ 8377699 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgGGAGTTTATTTTAGTTTGACAACAAAAGCAAATCAAAATGAAAGAGGTGAAACAAAGGTTTAATGCAGGTAATGCTACAAACGTGATTATAAAGTGTTTAAAATTCCATACAGTAATCTGAGTTAACAGATGGATTTATAATTTAAGACTAAAAAACATACAATGACTGGATATAATGTACTCAAAATATAATGCATTCCGATACAAGACAAACTAAATCTTTATGCACTAAAACCTAGGCGCACAAACAAAGCTAGGTTTTGTACTGGACATTACATTGTACGCTATTATATTCACCATgtagattgtaatttatataaatatatatgtacatataataTAAAGCATCATGTTATCAAATCATTTAAGATTTTCTAACTATATTGAGTATAATACCCAAATGTatgaatacatacatatataataatttgatataatataatacatcaTAAGatgttaatatttatttaaagagaTATGTATTTTTCTACACAGTAGAGCAAAAAGCAAAGAAATTACTGACTATGGTATTTTAAGGATTAGGTTAAAGAGGTTGCTGTAATGCTACAGCACCAGAAACACACTCTCTGGTGCTCTATTACAAGTCAAAAAGCTTCCACAGCTTAGGCTCACGTTAACACCAATATTTGGGGGTCCTGAGTGGACCAGGAGCCTGTATTACAAAGCAAGATTAGTGGGTTAGCCAGCTGTCTTTAGGCTTAACTCAGATTTGGTAACGTGCTTCTGAGCAAGTCGTCATTCCAAATGTCCATGTTGGGTCCCAACATGGACAAAAGTACTGAATTTACACTAAATTGACCACAAATTAAGAGTAGCCTATACATAATTTTATGTCAGTAGAATCACTTTGAATTTCCAGACTTTCCTTGGGTGAAAACATAACTTTTTCCTGCAGATGTAACCTAATTTAGTTGGTATCACAGTTTCATCTCATAAAACAATGTTAGGTCACCCAAAGAAAGCCAGACTAGTCTGATCTTGCTGCGTGTTACAGGCCCCTGGGTATATTAGTGGGAATTGGTCCTCAAAGTGCACTCACTGGCACCGCAGAGAGTCCGTCAGCTTCCACAGCCTCAAGAACTATTCATCTGTGTCACCAATTAATGACTATTGGCTGTGCAATTATTATAATAGCTGACACTGTTAAAAAACTATTTGTGTTAGGGCCCCAGCTAgggccagtcacagactgatggcagcattattGTAGAGCCCAATGGATTCTGTGGTAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261307 lncRNA upstream 240015 8126718 ~ 8129363 (+) True LOC120548141
XR_005637145.1 lncRNA upstream 240017 8126999 ~ 8129361 (+) False LOC120548141
TU261312 lncRNA upstream 243385 8124918 ~ 8125993 (+) True G192413
TU261305 lncRNA upstream 268225 8075930 ~ 8101153 (+) True bean1
TU261311 lncRNA upstream 294419 8073781 ~ 8074959 (+) True G192412
TU261457 lncRNA downstream 480292 8857991 ~ 8904877 (+) True G192530
TU261455 lncRNA downstream 501459 8879158 ~ 8904877 (+) False G192530
XR_005637142.1 lncRNA downstream 599505 8977204 ~ 9058418 (+) True LOC120548135
XR_005637143.1 lncRNA downstream 599505 8977204 ~ 9058418 (+) False LOC120548135
XR_005637144.1 lncRNA downstream 599505 8977204 ~ 9058418 (+) False LOC120548135
XM_039784354.1 mRNA upstream 40449 8255414 ~ 8328929 (+) True LOC120548244
XM_039784656.1 mRNA upstream 231572 8130582 ~ 8137806 (+) True LOC120548392
XM_039784812.1 mRNA upstream 250315 8066336 ~ 8119063 (+) False bean1
XM_039784813.1 mRNA upstream 250315 8066883 ~ 8119063 (+) False bean1
XM_039784811.1 mRNA upstream 250316 8066336 ~ 8119062 (+) False bean1
XM_039784111.1 mRNA downstream 42880 8420579 ~ 8450391 (+) True b3gnt2b
XM_039784110.1 mRNA downstream 42880 8420579 ~ 8450391 (+) False b3gnt2b
XM_039783401.1 mRNA downstream 103727 8481426 ~ 8641787 (+) True ehbp1
XM_039783405.1 mRNA downstream 103727 8481426 ~ 8641787 (+) False ehbp1
XM_039783406.1 mRNA downstream 103727 8481426 ~ 8641787 (+) False ehbp1
unassigned_transcript_1115 other upstream 418190 7951117 ~ 7951188 (+) True trnaq-cug_15
TU261142 other upstream 1564826 6800524 ~ 6804552 (+) True LOC120547751
TU261063 other upstream 1863559 6485631 ~ 6505819 (+) False LOC120548025
TU261064 other upstream 1868283 6485631 ~ 6501095 (+) False LOC120548025
XR_005637125.1 other upstream 2008387 6324515 ~ 6360991 (+) False itsn1
XR_005637075.1 other downstream 1228826 9606525 ~ 9624564 (+) False ddx43
TU261855 other downstream 1937247 10314946 ~ 10323760 (+) False LOC120547509
TU261892 other downstream 2063828 10441527 ~ 10442085 (+) True G192834
TU261935 other downstream 2209079 10586778 ~ 10589051 (+) False mrpl57
TU261925 other downstream 2209123 10586822 ~ 10591159 (+) False mrpl57

Expression Profile